Research
Below is a list of published manuscripts from the MATCH lab and collaborations involving Dr. Marco Marra. Please excuse any errors generated during the automated process.
Highlighted
A longitudinal single-cell atlas of treatment response in pediatric AML.
Cancer cell
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16 Nov 2023
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pubmed:37977148
All
2024
Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation.
Genome research
·
05 Dec 2024
·
pubmed:39638560
Adaptable and comprehensive approaches for long-read nanopore sequencing of polyadenylated and non-polyadenylated RNAs.
Frontiers in genetics
·
02 Dec 2024
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pubmed:39687742
Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities.
Genome medicine
·
22 Nov 2024
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pubmed:39578878
Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes.
Cell genomics
·
10 Oct 2024
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pubmed:39406235
Diagnostic and Therapeutic Implications of a FUS::TFCP2 Fusion and ALK Activation in a Metastatic Rhabdomyosarcoma.
Genes, chromosomes & cancer
·
01 Sep 2024
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pubmed:39302072
Rapid microdissection of tissue sections via laser ablation.
Journal of clinical pathology
·
17 May 2024
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pubmed:38429092
Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers.
Nature communications
·
16 May 2024
·
pubmed:38755180
Exploration of Germline Correlates and Risk of Immune-Related Adverse Events in Advanced Cancer Patients Treated with Immune Checkpoint Inhibitors.
Current oncology (Toronto, Ont.)
·
30 Mar 2024
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pubmed:38668043
The CMT2D locus: refined genetic position and construction of a bacterial clone-based physical map
Genome Research
·
27 Jan 2024
·
wosuid:WOS:000081241400005
A public database for gene expression in human cancers
Cancer Research
·
27 Jan 2024
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wosuid:WOS:000083500200002
Multisite clinical cross-validation and variant interpretation of a next generation sequencing panel for lymphoid cancer prognostication.
Journal of clinical pathology
·
05 Jan 2024
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pubmed:38182402
2023
A longitudinal single-cell atlas of treatment response in pediatric AML
Cancer Cell
·
01 Dec 2023
·
doi:10.1016/j.ccell.2023.10.008
Testing.
A longitudinal single-cell atlas of treatment response in pediatric AML.
Cancer cell
·
16 Nov 2023
·
pubmed:37977148
Genomic structures and regulation patterns at HPV integration sites in cervical cancer.
bioRxiv : the preprint server for biology
·
05 Nov 2023
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pubmed:37961641
Genetic subdivisions of follicular lymphoma defined by distinct coding and noncoding mutation patterns.
Blood
·
10 Aug 2023
·
pubmed:37084389
Chemokine expression predicts T cell-inflammation and improved survival with checkpoint inhibition across solid cancers.
NPJ precision oncology
·
09 Aug 2023
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pubmed:37558751
A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.
BioTechniques
·
08 Aug 2023
·
pubmed:37551834
GRETTA: an R package for mapping in silico genetic interaction and essentiality networks
Bioinformatics
·
16 Jun 2023
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doi:10.1093/bioinformatics/btad381
Relapse Timing Is Associated With Distinct Evolutionary Dynamics in Diffuse Large B-Cell Lymphoma.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology
·
15 Jun 2023
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pubmed:37319384
GRETTA: an R package for mapping in silico genetic interaction and essentiality networks.
Bioinformatics (Oxford, England)
·
01 Jun 2023
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pubmed:37326978
Oncogenic Viruses and the Epigenome: How Viruses Hijack Epigenetic Mechanisms to Drive Cancer
International Journal of Molecular Sciences
·
31 May 2023
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doi:10.3390/ijms24119543
Oncogenic Viruses and the Epigenome: How Viruses Hijack Epigenetic Mechanisms to Drive Cancer.
International journal of molecular sciences
·
31 May 2023
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pubmed:37298494
Multi-Omic Analysis of CIC’s Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity
Cancers
·
17 May 2023
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doi:10.3390/cancers15102805
Multi-Omic Analysis of CIC's Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity.
Cancers
·
17 May 2023
·
pubmed:37345142
Homologous recombination deficiency signatures in gastrointestinal and thoracic cancers correlate with platinum therapy duration.
NPJ precision oncology
·
24 Mar 2023
·
pubmed:36964191
Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study
International Journal of Molecular Sciences
·
20 Mar 2023
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doi:10.3390/ijms24065869
Relapse timing is associated with distinct evolutionary dynamics in DLBCL.
medRxiv : the preprint server for health sciences
·
08 Mar 2023
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pubmed:36945587
Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma.
Blood
·
23 Feb 2023
·
pubmed:36201743
2022
Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation.
Nature
·
01 Dec 2022
·
pubmed:36446943
Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma
Nature Communications
·
08 Oct 2022
·
doi:10.1038/S41467-022-33718-7
Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma.
Nature communications
·
08 Oct 2022
·
pubmed:36209277
The Drivers, Mechanisms, and Consequences of Genome Instability in HPV-Driven Cancers
Cancers
·
23 Sep 2022
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doi:10.3390/cancers14194623
The Drivers, Mechanisms, and Consequences of Genome Instability in HPV-Driven Cancers.
Cancers
·
23 Sep 2022
·
pubmed:36230545
Failure of human rhombic lip differentiation underlies medulloblastoma formation.
Nature
·
21 Sep 2022
·
pubmed:36131014
TMBur: a distributable tumor mutation burden approach for whole genome sequencing
BMC Medical Genomics
·
07 Sep 2022
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doi:10.1186/S12920-022-01348-Z
TMBur: a distributable tumor mutation burden approach for whole genome sequencing.
BMC medical genomics
·
07 Sep 2022
·
pubmed:36071521
Whole-genome and transcriptome analysis enhances precision cancer treatment options
Annals of Oncology
·
01 Sep 2022
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doi:10.1016/J.ANNONC.2022.05.522
Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2.
The journal of applied laboratory medicine
·
01 Sep 2022
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pubmed:35723286
Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing
eLife
·
05 Jul 2022
·
doi:10.7554/eLife.77898
Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing.
eLife
·
05 Jul 2022
·
pubmed:35787786
Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2
The Journal of Applied Laboratory Medicine
·
20 Jun 2022
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doi:10.1093/JALM/JFAC054
Exceptional response to combination ipilimumab and nivolumab in metastatic uveal melanoma: Insights from genomic analysis
Melanoma Research
·
17 Jun 2022
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doi:10.1097/CMR.0000000000000810
The Neoantigen Landscape of the Coding and Noncoding Cancer Genome Space
The Journal of Molecular Diagnostics
·
01 Jun 2022
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doi:10.1016/J.JMOLDX.2022.02.004
Whole-genome and transcriptome analysis of advanced adrenocortical cancer highlights multiple alterations affecting epigenome and DNA repair pathways.
Cold Spring Harbor molecular case studies
·
28 Apr 2022
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pubmed:35483882
Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data
Frontiers in Genetics
·
27 Apr 2022
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doi:10.3389/FGENE.2022.834764
Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data.
Frontiers in genetics
·
27 Apr 2022
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pubmed:35571031
Single-cell landscapes of primary glioblastomas and matched explants and cell lines show variable retention of inter- and intratumor heterogeneity
Cancer Cell
·
01 Apr 2022
·
doi:10.1016/J.CCELL.2022.02.016
The Neoantigen Landscape of the Coding and Noncoding Cancer Genome Space.
The Journal of molecular diagnostics : JMD
·
31 Mar 2022
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pubmed:35367630
Single-cell landscapes of primary glioblastomas and matched explants and cell lines show variable retention of inter- and intratumor heterogeneity.
Cancer cell
·
17 Mar 2022
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pubmed:35303420
The impact of whole genome and transcriptome analysis (WGTA ) on predictive biomarker discovery and diagnostic accuracy of advanced malignancies
The Journal of Pathology: Clinical Research
·
08 Mar 2022
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doi:10.1002/CJP2.265
The impact of whole genome and transcriptome analysis (WGTA) on predictive biomarker discovery and diagnostic accuracy of advanced malignancies.
The journal of pathology. Clinical research
·
08 Mar 2022
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pubmed:35257510
Cost-Effectiveness of Molecularly Guided Treatment in Diffuse Large B-Cell Lymphoma (DLBCL) in Patients under 60
Cancers
·
12 Feb 2022
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doi:10.3390/CANCERS14040908
Cost-Effectiveness of Molecularly Guided Treatment in Diffuse Large B-Cell Lymphoma (DLBCL) in Patients under 60.
Cancers
·
12 Feb 2022
·
pubmed:35205656
A platform for oncogenomic reporting and interpretation
Nature Communications
·
09 Feb 2022
·
doi:10.1038/S41467-022-28348-Y
A platform for oncogenomic reporting and interpretation.
Nature communications
·
09 Feb 2022
·
pubmed:35140225
Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents
Journal of Virological Methods
·
01 Jan 2022
·
doi:10.1016/J.JVIROMET.2021.114339
ICGC-ARGO precision medicine: familial matters in pancreatic cancer
The Lancet Oncology
·
01 Jan 2022
·
doi:10.1016/S1470-2045(21)00703-8
Retraction Note: Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.
Nature neuroscience
·
01 Jan 2022
·
pubmed:34907396
2021
Integrative multi‐omic analysis reveals neurodevelopmental gene dysregulation in CIC ‐knockout and IDH1 ‐mutant cells
The Journal of Pathology
·
22 Dec 2021
·
doi:10.1002/path.5835
Integrative multi-omic analysis reveals neurodevelopmental gene dysregulation in CIC-knockout and IDH1-mutant cells.
The Journal of pathology
·
22 Dec 2021
·
pubmed:34767259
Clinical response to nivolumab in an INI1-deficient pediatric chordoma correlates with immunogenic recognition of brachyury
npj Precision Oncology
·
20 Dec 2021
·
doi:10.1038/S41698-021-00238-4
Clinical response to nivolumab in an INI1-deficient pediatric chordoma correlates with immunogenic recognition of brachyury.
NPJ precision oncology
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20 Dec 2021
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pubmed:34931022
Early-stage economic analysis of research-based comprehensive genomic sequencing for advanced cancer care
Journal of Community Genetics
·
29 Nov 2021
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doi:10.1007/S12687-021-00557-W
Early-stage economic analysis of research-based comprehensive genomic sequencing for advanced cancer care.
Journal of community genetics
·
29 Nov 2021
·
pubmed:34843087
Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy.
Cell reports
·
16 Nov 2021
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pubmed:34788622
Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy
Cell Reports
·
01 Nov 2021
·
doi:10.1016/j.celrep.2021.110023
Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.
Journal of virological methods
·
20 Oct 2021
·
pubmed:34687784
Proteotranscriptomic classification and characterization of pancreatic neuroendocrine neoplasms.
Cell reports
·
12 Oct 2021
·
pubmed:34644566
Robust somatic copy number estimation using coarse-to-fine segmentation
Cold Spring Harbor Laboratory
·
08 Aug 2021
·
doi:10.1101/2021.08.06.455329
Clonal fitness inferred from time-series modelling of single-cell cancer genomes
Nature
·
23 Jun 2021
·
doi:10.1038/S41586-021-03648-3
Clonal fitness inferred from time-series modelling of single-cell cancer genomes.
Nature
·
23 Jun 2021
·
pubmed:34163070
Clinical and cost outcomes following genomics‐informed treatment for advanced cancers
Cancer Medicine
·
21 Jun 2021
·
doi:10.1002/CAM4.4076
Clinical and cost outcomes following genomics-informed treatment for advanced cancers.
Cancer medicine
·
21 Jun 2021
·
pubmed:34152087
A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells
Frontiers in Genetics
·
03 Jun 2021
·
doi:10.3389/FGENE.2021.665888
A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells.
Frontiers in genetics
·
03 Jun 2021
·
pubmed:34149808
A Methodology to Evaluate the Effects of Kinematic Measurement Uncertainties on Knee Ligament Properties Estimated From Laxity Measurements.
Journal of biomechanical engineering
·
01 Jun 2021
·
pubmed:33537754
Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease
Developmental Cell
·
01 May 2021
·
doi:10.1016/J.DEVCEL.2021.04.001
Molecular attributes underlying central nervous system and systemic relapse in diffuse large B-cell lymphoma.
Haematologica
·
01 May 2021
·
pubmed:32817292
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia
Nature Communications
·
30 Apr 2021
·
doi:10.1038/S41467-021-22625-Y
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia.
Nature communications
·
30 Apr 2021
·
pubmed:33931648
Single-cell landscapes of primary glioblastomas and matched organoids and cell lines reveal variable retention of inter- and intra-tumor heterogeneity
Cold Spring Harbor Laboratory
·
26 Apr 2021
·
doi:10.1101/2021.04.24.441206
The impact of MYC and BCL2 structural variants in tumors of DLBCL morphology and mechanisms of false-negative MYC IHC.
Blood
·
22 Apr 2021
·
pubmed:33120427
Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease.
Developmental cell
·
22 Apr 2021
·
pubmed:33891899
The transcriptional landscape of Shh medulloblastoma
Nature Communications
·
19 Mar 2021
·
doi:10.1038/S41467-021-21883-0
The transcriptional landscape of Shh medulloblastoma.
Nature communications
·
19 Mar 2021
·
pubmed:33741928
Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase
Genome Biology
·
22 Feb 2021
·
doi:10.1186/S13059-021-02283-5
Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase.
Genome biology
·
22 Feb 2021
·
pubmed:33618748
NTRK2 Fusion driven pediatric glioblastoma: Identification of oncogenic Drivers via integrative Genome and transcriptome profiling
Clinical Case Reports
·
10 Feb 2021
·
doi:10.1002/CCR3.3804
NTRK2 Fusion driven pediatric glioblastoma: Identification of oncogenic Drivers via integrative Genome and transcriptome profiling.
Clinical case reports
·
10 Feb 2021
·
pubmed:33768871
Uncovering Clinically Relevant Gene Fusions with Integrated Genomic and Transcriptomic Profiling of Metastatic Cancers
Clinical Cancer Research
·
15 Jan 2021
·
doi:10.1158/1078-0432.CCR-20-1900
Gradient of Developmental and Injury Response transcriptional states defines functional vulnerabilities underpinning glioblastoma heterogeneity
Nature Cancer
·
04 Jan 2021
·
doi:10.1038/S43018-020-00154-9
Gradient of Developmental and Injury Response transcriptional states defines functional vulnerabilities underpinning glioblastoma heterogeneity.
Nature cancer
·
04 Jan 2021
·
pubmed:35122077
Subtype-Discordant Pancreatic Ductal Adenocarcinoma Tumors Show Intermediate Clinical and Molecular Characteristics
Clinical Cancer Research
·
01 Jan 2021
·
doi:10.1158/1078-0432.CCR-20-2831
Genome and Transcriptome Biomarkers of Response to Immune Checkpoint Inhibitors in Advanced Solid Tumors
Clinical Cancer Research
·
01 Jan 2021
·
doi:10.1158/1078-0432.CCR-20-1163
Delving into Early-onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In?
Clinical Cancer Research
·
01 Jan 2021
·
doi:10.1158/1078-0432.CCR-20-1042
2020
Tumor infiltrating neutrophils and gland formation predict overall survival and molecular subgroups in pancreatic ductal adenocarcinoma
Cancer Medicine
·
28 Dec 2020
·
doi:10.1002/CAM4.3695
Tumor infiltrating neutrophils and gland formation predict overall survival and molecular subgroups in pancreatic ductal adenocarcinoma.
Cancer medicine
·
28 Dec 2020
·
pubmed:33372414
Whole-slide laser microdissection for tumour enrichment.
The Journal of pathology
·
09 Dec 2020
·
pubmed:33135777
Matching methods in precision oncology: An introduction and illustrative example
Molecular Genetics & Genomic Medicine
·
25 Nov 2020
·
doi:10.1002/MGG3.1554
Matching methods in precision oncology: An introduction and illustrative example.
Molecular genetics & genomic medicine
·
25 Nov 2020
·
pubmed:33237632
A three-dimensional finite-element model of gluteus medius muscle incorporating inverse-dynamics-based optimization for simulation of non-uniform muscle contraction.
Medical engineering & physics
·
20 Nov 2020
·
pubmed:33461672
Uncovering Clinically Relevant Gene Fusions with Integrated Genomic and Transcriptomic Profiling of Metastatic Cancers.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
04 Nov 2020
·
pubmed:33148671
Improved structural variant interpretation for hereditary cancer susceptibility using long-read sequencing
Genetics in Medicine
·
01 Nov 2020
·
doi:10.1038/S41436-020-0880-8
Impact of MYC and BCL2 structural variants in tumors of DLBCL morphology and mechanisms of false-negative MYC IHC
Blood
·
29 Oct 2020
·
doi:10.1182/BLOOD.2020007193
TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L
BMC Biology
·
28 Oct 2020
·
doi:10.1186/S12915-020-00895-0
TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L.
BMC biology
·
28 Oct 2020
·
pubmed:33115448
Subtype-Discordant Pancreatic Ductal Adenocarcinoma Tumors Show Intermediate Clinical and Molecular Characteristics.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
13 Oct 2020
·
pubmed:33051307
Glioma-derived IL-33 orchestrates an inflammatory brain tumor microenvironment that accelerates glioma progression
Nature Communications
·
05 Oct 2020
·
doi:10.1038/S41467-020-18569-4
Genome and Transcriptome Biomarkers of Response to Immune Checkpoint Inhibitors in Advanced Solid Tumors.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
05 Oct 2020
·
pubmed:33020056
Glioma-derived IL-33 orchestrates an inflammatory brain tumor microenvironment that accelerates glioma progression.
Nature communications
·
05 Oct 2020
·
pubmed:33020472
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
Nature Communications
·
21 Sep 2020
·
doi:10.1038/S41467-020-18151-Y
Delving into Early-onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In?
Clinical cancer research : an official journal of the American Association for Cancer Research
·
21 Sep 2020
·
pubmed:32958704
Sex differences in oncogenic mutational processes
Nature Communications
·
28 Aug 2020
·
doi:10.1038/S41467-020-17359-2
Evaluating genomic biomarkers associated with resistance or sensitivity to chemotherapy in patients with advanced breast and colorectal cancer
Journal of Oncology Pharmacy Practice
·
26 Aug 2020
·
doi:10.1177/1078155220951845
Molecular attributes underlying central nervous system and systemic relapse in diffuse large B-cell lymphoma
Haematologica
·
13 Aug 2020
·
doi:10.3324/HAEMATOL.2020.255950
Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes.
Nature genetics
·
03 Aug 2020
·
pubmed:32747824
Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade–specific epigenome and transcriptome landscapes
Nature Genetics
·
01 Aug 2020
·
doi:10.1038/S41588-020-0673-7
Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing
Blood
·
30 Jul 2020
·
doi:10.1182/BLOOD.2019002385
Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing.
Blood
·
30 Jul 2020
·
pubmed:32160292
Epigenomic programming in early fetal brain development.
Epigenomics
·
17 Jul 2020
·
pubmed:32677466
Genetic and evolutionary patterns of treatment resistance in relapsed B-cell lymphoma.
Blood advances
·
14 Jul 2020
·
pubmed:32589730
Improved structural variant interpretation for hereditary cancer susceptibility using long-read sequencing.
Genetics in medicine : official journal of the American College of Medical Genetics
·
06 Jul 2020
·
pubmed:32624572
Genetic and evolutionary patterns of treatment resistance in relapsed B-cell lymphoma
Blood Advances
·
26 Jun 2020
·
doi:10.1182/BLOODADVANCES.2020001696
Endogenous Retrovirus Transcript Levels Are Associated with Immunogenic Signatures in Multiple Metastatic Cancer Types.
Molecular cancer therapeutics
·
09 Jun 2020
·
pubmed:32518206
Validation of the RHL30 digital gene expression assay as a prognostic biomarker for relapsed Hodgkin lymphoma
British Journal of Haematology
·
08 Jun 2020
·
doi:10.1111/BJH.16777
Validation of the RHL30 digital gene expression assay as a prognostic biomarker for relapsed Hodgkin lymphoma.
British journal of haematology
·
08 Jun 2020
·
pubmed:32510594
Integration of Whole-Genome Sequencing With Circulating Tumor DNA Analysis Captures Clonal Evolution and Tumor Heterogeneity in Non-V600 BRAF Mutant Colorectal Cancer
Clinical Colorectal Cancer
·
01 Jun 2020
·
doi:10.1016/J.CLCC.2020.02.001
Epigenomic Programming in Early Fetal Brain Development
Epigenomics
·
01 Jun 2020
·
doi:10.2217/EPI-2019-0319
Establishing a Framework for the Clinical Translation of Germline Findings in Precision Oncology
JNCI Cancer Spectrum
·
29 May 2020
·
doi:10.1093/JNCICS/PKAA045
Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.
Nature neuroscience
·
18 May 2020
·
pubmed:32424282
Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes
Nature Cancer
·
13 Apr 2020
·
doi:10.1038/S43018-020-0050-6
Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes.
Nature cancer
·
13 Apr 2020
·
pubmed:35121966
Author Correction: Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution.
Nature genetics
·
01 Apr 2020
·
pubmed:32051610
Single-cell analysis of RORα tracer mouse lung reveals ILC progenitors and effector ILC2 subsets.
The Journal of experimental medicine
·
02 Mar 2020
·
pubmed:31816636
TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma
Nature Medicine
·
24 Feb 2020
·
doi:10.1038/S41591-020-0757-Z
TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma.
Nature medicine
·
24 Feb 2020
·
pubmed:32094924
Integration of Whole-Genome Sequencing With Circulating Tumor DNA Analysis Captures Clonal Evolution and Tumor Heterogeneity in Non-V600 BRAF Mutant Colorectal Cancer.
Clinical colorectal cancer
·
10 Feb 2020
·
pubmed:32151517
Pan-cancer analysis of whole genomes
Nature
·
05 Feb 2020
·
doi:10.1038/S41586-020-1969-6
Fluorouracil sensitivity in a head and neck squamous cell carcinoma with a somatic
Cold Spring Harbor molecular case studies
·
03 Feb 2020
·
pubmed:31871216
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution
Nature Genetics
·
13 Jan 2020
·
doi:10.1038/S41588-019-0566-9
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution.
Nature genetics
·
13 Jan 2020
·
pubmed:31932696
Altered Gene Expression along the Glycolysis–Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer
Clinical Cancer Research
·
01 Jan 2020
·
doi:10.1158/1078-0432.CCR-19-1543
2019
Fluorouracil sensitivity in a head and neck squamous cell carcinoma with a somatic DPYD structural variant
Molecular Case Studies
·
23 Dec 2019
·
doi:10.1101/MCS.A004713
Abstract B56: Endogenous retrovirus transcript levels are associated with immunogenic signatures in multiple metastatic cancer types
Cancer Research
·
13 Dec 2019
·
doi:10.1158/1538-7445.PANCA19-B56
Single-cell analysis of RORα tracer mouse lung reveals ILC progenitors and effector ILC2 subsets
Journal of Experimental Medicine
·
05 Dec 2019
·
doi:10.1084/jem.20182293
Therapeutic Implication of Genomic Landscape of Adult Metastatic Sarcoma
JCO Precision Oncology
·
01 Dec 2019
·
doi:10.1200/PO.18.00325
Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing.
Cell
·
14 Nov 2019
·
pubmed:31730858
Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration.
Cell reports
·
07 Nov 2019
·
pubmed:31708418
Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration
Cell Reports
·
01 Nov 2019
·
doi:10.1016/J.CELREP.2019.10.013
Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing
Cell
·
01 Nov 2019
·
doi:10.1016/J.CELL.2019.10.026
Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.
PloS one
·
31 Oct 2019
·
pubmed:31671154
Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer
JAMA Network Open
·
25 Oct 2019
·
doi:10.1001/JAMANETWORKOPEN.2019.13968
Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma
Nature
·
09 Oct 2019
·
doi:10.1038/S41586-019-1650-0
Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma.
Nature
·
09 Oct 2019
·
pubmed:31664194
Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.
JAMA network open
·
02 Oct 2019
·
pubmed:31651965
Integrative genomic analysis identifies key pathogenic mechanisms in primary mediastinal large B-cell lymphoma
Blood
·
05 Sep 2019
·
doi:10.1182/blood.2019001126
Altered Gene Expression along the Glycolysis-Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
03 Sep 2019
·
pubmed:31481506
Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments
Proceedings of the National Academy of Sciences
·
30 Aug 2019
·
doi:10.1073/PNAS.1813495116
Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
Proceedings of the National Academy of Sciences of the United States of America
·
30 Aug 2019
·
pubmed:31471491
Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma
The Journal of Pathology
·
28 Aug 2019
·
doi:10.1002/path.5319
Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma.
The Journal of pathology
·
28 Aug 2019
·
pubmed:31236944
NRG1 Gene Fusions Are Recurrent, Clinically Actionable Gene Rearrangements in KRAS Wild-Type Pancreatic Ductal Adenocarcinoma
Clinical Cancer Research
·
01 Aug 2019
·
doi:10.1158/1078-0432.ccr-19-0191
The pivotal role of sampling recurrent tumors in the precision care of patients with tumors of the central nervous system
Molecular Case Studies
·
01 Aug 2019
·
doi:10.1101/mcs.a004143
The pivotal role of sampling recurrent tumors in the precision care of patients with tumors of the central nervous system.
Cold Spring Harbor molecular case studies
·
01 Aug 2019
·
pubmed:31371350
Integrative genomic analysis identifies key pathogenic mechanisms in primary mediastinal large B-cell lymphoma.
Blood
·
10 Jul 2019
·
pubmed:31292115
High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma
Genome Research
·
27 Jun 2019
·
doi:10.1101/gr.246520.118
High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma.
Genome research
·
27 Jun 2019
·
pubmed:31249064
The Genome of the Steller Sea Lion (Eumetopias jubatus)
Genes
·
26 Jun 2019
·
doi:10.3390/genes10070486
The Genome of the Steller Sea Lion (
Genes
·
26 Jun 2019
·
pubmed:31248052
Genomic characterization of a well-differentiated grade 3 pancreatic neuroendocrine tumor.
Cold Spring Harbor molecular case studies
·
03 Jun 2019
·
pubmed:31160355
Genomic characterization of a well-differentiated grade 3 pancreatic neuroendocrine tumor
Molecular Case Studies
·
01 Jun 2019
·
doi:10.1101/MCS.A003814
[no title info]
Clinical cancer research : an official journal of the American Association for Cancer Research
·
08 May 2019
·
pubmed:31068372
Capicua regulates neural stem cell proliferation and lineage specification through control of Ets factors
Nature Communications
·
01 May 2019
·
doi:10.1038/S41467-019-09949-6
Intratumoral Genetic and Functional Heterogeneity in Pediatric Glioblastoma
Cancer Research
·
01 May 2019
·
doi:10.1158/0008-5472.can-18-3441
Childhood cerebellar tumours mirror conserved fetal transcriptional programs
Nature
·
01 May 2019
·
doi:10.1038/s41586-019-1158-7
Capicua regulates neural stem cell proliferation and lineage specification through control of Ets factors.
Nature communications
·
01 May 2019
·
pubmed:31043608
Childhood cerebellar tumours mirror conserved fetal transcriptional programs.
Nature
·
01 May 2019
·
pubmed:31043743
Application of a Neural Network Whole Transcriptome–Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers
JAMA Network Open
·
26 Apr 2019
·
doi:10.1001/jamanetworkopen.2019.2597
Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Cancer Discovery
·
01 Apr 2019
·
doi:10.1158/2159-8290.cd-18-1090
Base excision repair deficiency signatures implicate germline and somatic
Cold Spring Harbor molecular case studies
·
01 Apr 2019
·
pubmed:30833417
Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma
Blood
·
21 Mar 2019
·
doi:10.1182/blood-2018-09-871418
Intratumoral Genetic and Functional Heterogeneity in Pediatric Glioblastoma.
Cancer research
·
15 Mar 2019
·
pubmed:30877103
Base excision repair deficiency signatures implicate germline and somatic MUTYH aberrations in pancreatic ductal adenocarcinoma and breast cancer oncogenesis
Molecular Case Studies
·
04 Mar 2019
·
doi:10.1101/mcs.a003681
Publisher Correction: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions.
Nature medicine
·
01 Mar 2019
·
pubmed:30705421
A High-Throughput Protocol for Isolating Cell-Free Circulating Tumor DNA from Peripheral Blood
BioTechniques
·
01 Feb 2019
·
doi:10.2144/btn-2018-0148
A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood.
BioTechniques
·
01 Feb 2019
·
pubmed:30744412
Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition.
Cancer discovery
·
31 Jan 2019
·
pubmed:30705065
Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.
Nucleic acids research
·
25 Jan 2019
·
pubmed:30418619
A distinct neurodevelopmental syndrome with intellectual disability, autism spectrum disorder, characteristic facies, and macrocephaly is caused by defects in CHD8
Journal of Human Genetics
·
22 Jan 2019
·
doi:10.1038/S10038-019-0561-0
A distinct neurodevelopmental syndrome with intellectual disability, autism spectrum disorder, characteristic facies, and macrocephaly is caused by defects in CHD8.
Journal of human genetics
·
22 Jan 2019
·
pubmed:30670789
Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma
Journal of Clinical Oncology
·
20 Jan 2019
·
doi:10.1200/jco.18.01583
Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma.
Blood
·
07 Jan 2019
·
pubmed:30617194
2018
Whole-genome and transcriptome profiling of a metastatic thyroid-like follicular renal cell carcinoma.
Cold Spring Harbor molecular case studies
·
17 Dec 2018
·
pubmed:30446580
Clinical outcomes after whole-genome sequencing in patients with metastatic non-small-cell lung cancer
Molecular Case Studies
·
04 Dec 2018
·
doi:10.1101/mcs.a002659
Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology
·
03 Dec 2018
·
pubmed:30523716
Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Cancer Discovery
·
01 Dec 2018
·
doi:10.1158/2159-8290.cd-18-0804
The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis
Genes
·
30 Nov 2018
·
doi:10.3390/GENES9120598
The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.
Genes
·
30 Nov 2018
·
pubmed:30513700
Whole-genome and transcriptome profiling of a metastatic thyroid-like follicular renal cell carcinoma
Molecular Case Studies
·
16 Nov 2018
·
doi:10.1101/mcs.a003137
Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples
Nucleic Acids Research
·
12 Nov 2018
·
doi:10.1093/nar/gky1142
Temporal Dynamics of Genomic Alterations in a BRCA1 Germline–Mutated Pancreatic Cancer With Low Genomic Instability Burden but Exceptional Response to Fluorouracil, Oxaliplatin, Leucovorin, and Irinotecan
JCO Precision Oncology
·
01 Nov 2018
·
doi:10.1200/PO.18.00057
Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer
JCO Precision Oncology
·
01 Nov 2018
·
doi:10.1200/PO.17.00198
High-resolution architecture and partner genes of
Blood advances
·
23 Oct 2018
·
pubmed:30348671
High-resolution architecture and partner genes of MYC rearrangements in lymphoma with DLBCL morphology
Blood Advances
·
22 Oct 2018
·
doi:10.1182/bloodadvances.2018023572
Temporal Dynamics of Genomic Alterations in a
JCO precision oncology
·
19 Oct 2018
·
pubmed:32913994
A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily
Cell Systems
·
01 Oct 2018
·
doi:10.1016/J.CELS.2018.08.010
Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer
Cell Reports
·
01 Oct 2018
·
doi:10.1016/j.celrep.2018.10.001
Genome-wide discovery of somatic regulatory variants in diffuse large B-cell lymphoma.
Nature communications
·
01 Oct 2018
·
pubmed:30275490
The genetic basis and cell of origin of mixed phenotype acute leukaemia
Nature
·
12 Sep 2018
·
doi:10.1038/S41586-018-0436-0
The genetic basis and cell of origin of mixed phenotype acute leukaemia.
Nature
·
12 Sep 2018
·
pubmed:30209392
ABT-888 restores sensitivity in temozolomide resistant glioma cells and xenografts
PLOS ONE
·
28 Aug 2018
·
doi:10.1371/journal.pone.0202860
Transcriptomic analysis of CIC and ATXN1L reveal a functional relationship exploited by cancer
Oncogene
·
09 Aug 2018
·
doi:10.1038/s41388-018-0427-5
Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
Cancer Cell
·
01 Aug 2018
·
doi:10.1016/j.ccell.2018.07.001
Corrigendum: Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline
Cold Spring Harbor molecular case studies
·
01 Aug 2018
·
pubmed:30068734
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
The Lancet Oncology
·
01 Jun 2018
·
doi:10.1016/S1470-2045(18)30242-0
Integrated Molecular Characterization of Testicular Germ Cell Tumors
Cell Reports
·
01 Jun 2018
·
doi:10.1016/j.celrep.2018.05.039
A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases.
Cell
·
31 May 2018
·
pubmed:29856958
Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer.
JCO precision oncology
·
19 Apr 2018
·
pubmed:31372595
Erratum: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions.
Nature medicine
·
10 Apr 2018
·
pubmed:29634680
Application of genomics to identify therapeutic targets in recurrent pediatric papillary thyroid carcinoma.
Cold Spring Harbor molecular case studies
·
02 Apr 2018
·
pubmed:29610391
Personalized oncogenomic analysis of metastatic adenoid cystic carcinoma: using whole-genome sequencing to inform clinical decision-making.
Cold Spring Harbor molecular case studies
·
02 Apr 2018
·
pubmed:29610392
lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer
Cancer Cell
·
01 Apr 2018
·
doi:10.1016/j.ccell.2018.03.006
The Immune Landscape of Cancer
Immunity
·
01 Apr 2018
·
doi:10.1016/j.immuni.2018.03.023
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.075
Systematic Analysis of Splice-Site-Creating Mutations in Cancer
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.052
Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.086
Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.01.088
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.03.033
Personalized oncogenomic analysis of metastatic adenoid cystic carcinoma: using whole-genome sequencing to inform clinical decision-making
Molecular Case Studies
·
01 Apr 2018
·
doi:10.1101/mcs.a002626
Pathogenic Germline Variants in 10,389 Adult Cancers
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.03.039
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.064
Oncogenic Signaling Pathways in The Cancer Genome Atlas
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.03.035
Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.077
Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.03.034
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.046
Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.047
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.076
Genomic and Functional Approaches to Understanding Cancer Aneuploidy
Cancer Cell
·
01 Apr 2018
·
doi:10.1016/j.ccell.2018.03.007
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.050
Comprehensive Characterization of Cancer Driver Genes and Mutations
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.02.060
Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas
Cancer Cell
·
01 Apr 2018
·
doi:10.1016/j.ccell.2018.03.010
Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.03.022
Application of genomics to identify therapeutic targets in recurrent pediatric papillary thyroid carcinoma
Molecular Case Studies
·
01 Apr 2018
·
doi:10.1101/mcs.a002568
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.02.052
A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
Cell
·
01 Apr 2018
·
doi:10.1016/j.cell.2018.03.027
A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers
Cancer Cell
·
01 Apr 2018
·
doi:10.1016/j.ccell.2018.03.014
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
Cell Reports
·
01 Apr 2018
·
doi:10.1016/j.celrep.2018.03.063
Magnetic-resonance-imaging-based three-dimensional muscle reconstruction of hip abductor muscle volume in a person with a transfemoral bone-anchored prosthesis: A feasibility study.
Physiotherapy theory and practice
·
28 Mar 2018
·
pubmed:29589767
Flexing and downsizing the femoral component is not detrimental to patellofemoral biomechanics in posterior-referencing cruciate-retaining total knee arthroplasty.
Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA
·
20 Mar 2018
·
pubmed:29560510
Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma
npj Precision Oncology
·
19 Mar 2018
·
doi:10.1038/s41698-018-0050-5
Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma.
NPJ precision oncology
·
19 Mar 2018
·
pubmed:29872726
Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma.
Developmental cell
·
15 Mar 2018
·
pubmed:29551561
In situ comparison of A-mode ultrasound tracking system and skin-mounted markers for measuring kinematics of the lower extremity.
Journal of biomechanics
·
10 Mar 2018
·
pubmed:29573792
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
Cell Systems
·
01 Mar 2018
·
doi:10.1016/j.cels.2018.03.002
Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
Cell Systems
·
01 Mar 2018
·
doi:10.1016/j.cels.2018.03.003
Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma
Developmental Cell
·
01 Mar 2018
·
doi:10.1016/j.devcel.2018.02.012
Assessment of Capture and Amplicon-Based Approaches for the Development of a Targeted Next-Generation Sequencing Pipeline to Personalize Lymphoma Management
The Journal of Molecular Diagnostics
·
01 Mar 2018
·
doi:10.1016/j.jmoldx.2017.11.010
Gait symmetry and hip strength in women with developmental dysplasia following hip arthroplasty compared to healthy subjects: A cross-sectional study.
PloS one
·
23 Feb 2018
·
pubmed:29474431
A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases.
Cell
·
22 Feb 2018
·
pubmed:29474906
Molecular characterization of ERBB2-amplified colorectal cancer identifies potential mechanisms of resistance to targeted therapies: a report of two instructive cases
Molecular Case Studies
·
08 Feb 2018
·
doi:10.1101/mcs.a002535
Assessment of Capture and Amplicon-Based Approaches for the Development of a Targeted Next-Generation Sequencing Pipeline to Personalize Lymphoma Management.
The Journal of molecular diagnostics : JMD
·
08 Feb 2018
·
pubmed:29429887
The Integrated Genomic Landscape of Thymic Epithelial Tumors
Cancer Cell
·
01 Feb 2018
·
doi:10.1016/j.ccell.2018.01.003
A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases
Cell
·
01 Feb 2018
·
doi:10.1016/j.cell.2018.01.038
Molecular characterization of metastatic pancreatic neuroendocrine tumors (PNETs) using whole-genome and transcriptome sequencing.
Cold Spring Harbor molecular case studies
·
01 Feb 2018
·
pubmed:29092957
2017
Homologous Recombination Deficiency and Platinum-Based Therapy Outcomes in Advanced Breast Cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
15 Dec 2017
·
pubmed:29246904
Homologous Recombination Deficiency and Platinum-Based Therapy Outcomes in Advanced Breast Cancer
Clinical Cancer Research
·
14 Dec 2017
·
doi:10.1158/1078-0432.ccr-17-1941
Specific muscle strength is reduced in facioscapulohumeral dystrophy: An MRI based musculoskeletal analysis.
Neuromuscular disorders : NMD
·
12 Dec 2017
·
pubmed:29395674
The Genome of the Northern Sea Otter (Enhydra lutris kenyoni)
Genes
·
11 Dec 2017
·
doi:10.3390/genes8120379
The Genome of the Beluga Whale (Delphinapterus leucas)
Genes
·
11 Dec 2017
·
doi:10.3390/genes8120378
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
Nature Medicine
·
11 Dec 2017
·
doi:10.1038/nm.4439
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions.
Nature medicine
·
11 Dec 2017
·
pubmed:29227476
MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia
Journal of Clinical Oncology
·
10 Dec 2017
·
doi:10.1200/JCO.2017.74.7451
Successful targeting of the NRG1 pathway indicates novel treatment strategy for metastatic cancer
Annals of Oncology
·
01 Dec 2017
·
doi:10.1093/annonc/mdx523
Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
Cell
·
01 Nov 2017
·
doi:10.1016/j.cell.2017.10.014
Characterization of the human thyroid epigenome
Journal of Endocrinology
·
01 Nov 2017
·
doi:10.1530/JOE-17-0145
Molecular characterization of metastatic pancreatic neuroendocrine tumors (PNETs) using whole-genome and transcriptome sequencing
Molecular Case Studies
·
01 Nov 2017
·
doi:10.1101/mcs.a002329
MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology
·
25 Oct 2017
·
pubmed:29068783
Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer
Cell
·
01 Oct 2017
·
doi:10.1016/j.cell.2017.09.007
Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant
IDH1
Proceedings of the National Academy of Sciences
·
15 Sep 2017
·
doi:10.1073/pnas.1708914114
Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant
Proceedings of the National Academy of Sciences of the United States of America
·
15 Sep 2017
·
pubmed:28916733
Identification of GPC2 as an Oncoprotein and Candidate Immunotherapeutic Target in High-Risk Neuroblastoma.
Cancer cell
·
11 Sep 2017
·
pubmed:28898695
Detection and genomic characterization of a mammary-like adenocarcinoma
Molecular Case Studies
·
06 Sep 2017
·
doi:10.1101/mcs.a002170
Whole-genome analysis reveals unexpected dynamics of mutant subclone development in a patient with JAK2-V617F-positive chronic myeloid leukemia
Experimental Hematology
·
01 Sep 2017
·
doi:10.1016/j.exphem.2017.05.007
Identification of GPC2 as an Oncoprotein and Candidate Immunotherapeutic Target in High-Risk Neuroblastoma
Cancer Cell
·
01 Sep 2017
·
doi:10.1016/j.ccell.2017.08.003
Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline
Cold Spring Harbor molecular case studies
·
01 Sep 2017
·
pubmed:28514723
A Children's Oncology Group and TARGET initiative exploring the genetic landscape of Wilms tumor
Nature Genetics
·
21 Aug 2017
·
doi:10.1038/ng.3940
A Children's Oncology Group and TARGET initiative exploring the genetic landscape of Wilms tumor.
Nature genetics
·
21 Aug 2017
·
pubmed:28825729
Characterization of the human thyroid epigenome.
The Journal of endocrinology
·
14 Aug 2017
·
pubmed:28808080
Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma
Cancer Cell
·
01 Aug 2017
·
doi:10.1016/j.ccell.2017.07.003
Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
Cancer Cell
·
01 Aug 2017
·
doi:10.1016/j.ccell.2017.07.007
Evaluation of a Surrogate Contact Model in Force-Dependent Kinematic Simulations of Total Knee Replacement.
Journal of biomechanical engineering
·
01 Aug 2017
·
pubmed:28462424
The whole-genome landscape of medulloblastoma subtypes.
Nature
·
19 Jul 2017
·
pubmed:28726821
Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing
BMC Genomics
·
05 Jul 2017
·
doi:10.1186/s12864-017-3900-6
Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing.
BMC genomics
·
05 Jul 2017
·
pubmed:28679365
The whole-genome landscape of medulloblastoma subtypes
Nature
·
01 Jul 2017
·
doi:10.1038/nature22973
Pyruvate Kinase Inhibits Proliferation during Postnatal Cerebellar Neurogenesis and Suppresses Medulloblastoma Formation
Cancer Research
·
14 Jun 2017
·
doi:10.1158/0008-5472.CAN-16-3304
Whole-genome analysis reveals unexpected dynamics of mutant subclone development in a patient with JAK2-V617F-positive chronic myeloid leukemia.
Experimental hematology
·
08 Jun 2017
·
pubmed:28602946
Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma
Cell
·
01 Jun 2017
·
doi:10.1016/j.cell.2017.05.046
Carcinoma Ex Pleomorphic Adenoma: Case Report and Options for Systemic Therapy
Current Oncology
·
01 Jun 2017
·
doi:10.3747/co.24.3588
Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis
PLOS ONE
·
01 Jun 2017
·
doi:10.1371/journal.pone.0178706
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles
Cell Reports
·
01 Jun 2017
·
doi:10.1016/j.celrep.2017.06.008
Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.
PloS one
·
01 Jun 2017
·
pubmed:28570594
Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability
BMC Genomics
·
24 May 2017
·
doi:10.1186/s12864-017-3671-0
Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability.
BMC genomics
·
24 May 2017
·
pubmed:28539120
Genetic profiling of MYC and BCL2 in diffuse large B-cell lymphoma determines cell-of-origin–specific clinical impact
Blood
·
18 May 2017
·
doi:10.1182/blood-2016-11-747022
Pyruvate Kinase Inhibits Proliferation during Postnatal Cerebellar Neurogenesis and Suppresses Medulloblastoma Formation.
Cancer research
·
17 May 2017
·
pubmed:28515149
Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germlineCHEK2:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal breast carcinoma
Molecular Case Studies
·
16 May 2017
·
doi:10.1101/mcs.a001628
Anterior referencing of tibial slope in total knee arthroplasty considerably influences knee kinematics: a musculoskeletal simulation study.
Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA
·
12 May 2017
·
pubmed:28500391
Comparative transcriptome analysis of isogenic cell line models and primary cancers links capicua (CIC ) loss to activation of the MAPK signalling cascade
The Journal of Pathology
·
26 Apr 2017
·
doi:10.1002/path.4894
Comparative transcriptome analysis of isogenic cell line models and primary cancers links capicua (CIC) loss to activation of the MAPK signalling cascade.
The Journal of pathology
·
26 Apr 2017
·
pubmed:28295365
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes
Nature Genetics
·
24 Apr 2017
·
doi:10.1038/ng.3849
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes.
Nature genetics
·
24 Apr 2017
·
pubmed:28436987
Spatial heterogeneity in medulloblastoma
Nature Genetics
·
10 Apr 2017
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Spatial heterogeneity in medulloblastoma.
Nature genetics
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10 Apr 2017
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Genetic profiling of
Blood
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28 Mar 2017
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The cost and cost trajectory of whole‐genome analysis guiding treatment of patients with advanced cancers
Molecular Genetics & Genomic Medicine
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12 Mar 2017
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Correction: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer.
Oncotarget
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07 Mar 2017
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Integrated Molecular Characterization of Uterine Carcinosarcoma
Cancer Cell
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01 Mar 2017
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doi:10.1016/j.ccell.2017.02.010
Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma
Cancer Cell
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01 Feb 2017
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doi:10.1016/j.ccell.2017.01.001
Integrated genomic and molecular characterization of cervical cancer
Nature
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23 Jan 2017
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doi:10.1038/nature21386
Integrated genomic characterization of oesophageal carcinoma
Nature
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01 Jan 2017
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doi:10.1038/nature20805
2016
Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study
PLOS Medicine
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13 Dec 2016
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Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study.
PLoS medicine
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13 Dec 2016
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Sequencing Strategies to Guide Decision Making in Cancer Treatment
PLOS Medicine
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06 Dec 2016
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doi:10.1371/journal.pmed.1002189
Sequencing Strategies to Guide Decision Making in Cancer Treatment.
PLoS medicine
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06 Dec 2016
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pubmed:27923042
Personalized Oncogenomics in the Management of Gastrointestinal Carcinomas—Early Experiences from a Pilot Study
Current Oncology
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01 Dec 2016
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doi:10.3747/co.23.3165
A novel diffusion-tensor MRI approach for skeletal muscle fascicle length measurements.
Physiological reports
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01 Dec 2016
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pubmed:28003562
Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks.
Cell reports
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15 Nov 2016
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Significance of TP53 Mutation in Wilms Tumors with Diffuse Anaplasia: A Report from the Children's Oncology Group
Clinical Cancer Research
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14 Nov 2016
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doi:10.1158/1078-0432.CCR-16-0985
Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia
Nature Communications
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08 Nov 2016
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doi:10.1038/ncomms13331
Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour
Open Biology
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01 Nov 2016
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doi:10.1098/rsob.160275
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
Cell
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01 Nov 2016
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doi:10.1016/j.cell.2016.11.007
Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks
Cell Reports
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01 Nov 2016
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doi:10.1016/j.celrep.2016.10.058
Intragenic CNVs for epigenetic regulatory genes in intellectual disability: Survey identifies pathogenic and benign single exon changes.
American journal of medical genetics. Part A
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01 Nov 2016
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pubmed:27748065
Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour.
Open biology
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01 Nov 2016
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pubmed:27906134
Intragenic CNVs for epigenetic regulatory genes in intellectual disability: Survey identifies pathogenic and benign single exon changes
American Journal of Medical Genetics Part A
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17 Oct 2016
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doi:10.1002/ajmg.a.37669
Significance of TP53 Mutation in Wilms Tumors with Diffuse Anaplasia: A Report from the Children's Oncology Group.
Clinical cancer research : an official journal of the American Association for Cancer Research
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04 Oct 2016
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A Time-and-Motion Approach to Micro-Costing of High-Throughput Genomic Assays
Current Oncology
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01 Oct 2016
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doi:10.3747/co.23.2987
Small molecule epigenetic screen identifies novel EZH2 and HDAC inhibitors that target glioblastoma brain tumor-initiating cells.
Oncotarget
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13 Sep 2016
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pubmed:27449082
Investigation of PD-L1 Biomarker Testing Methods for PD-1 Axis Inhibition in Non-squamous Non–small Cell Lung Cancer
Journal of Histochemistry & Cytochemistry
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02 Sep 2016
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doi:10.1369/0022155416665338
Investigation of PD-L1 Biomarker Testing Methods for PD-1 Axis Inhibition in Non-squamous Non-small Cell Lung Cancer.
The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society
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02 Sep 2016
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pubmed:27591097
Comprehensive characterization of programmed death ligand structural rearrangements in B-cell non-Hodgkin lymphomas
Blood
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01 Sep 2016
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doi:10.1182/blood-2015-11-683003
ADAR1 Activation Drives Leukemia Stem Cell Self-Renewal by Impairing Let-7 Biogenesis
Cell Stem Cell
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01 Aug 2016
·
doi:10.1016/j.stem.2016.05.004
ETV6-NTRK3 Is Expressed in a Subset of ALK-Negative Inflammatory Myofibroblastic Tumors
American Journal of Surgical Pathology
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01 Aug 2016
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doi:10.1097/pas.0000000000000677
Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma
Cancer Cell
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01 Aug 2016
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doi:10.1016/j.ccell.2016.07.013
Small molecule epigenetic screen identifies novel EZH2 and HDAC inhibitors that target glioblastoma brain tumor-initiating cells
Oncotarget
·
18 Jul 2016
·
doi:10.18632/oncotarget.10661
CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML
Blood
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16 Jun 2016
·
doi:10.1182/blood-2016-04-709899
DNA methylation in adult diffuse gliomas
Briefings in Functional Genomics
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10 Jun 2016
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doi:10.1093/bfgp/elw019
DNA methylation in adult diffuse gliomas.
Briefings in functional genomics
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10 Jun 2016
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pubmed:27288434
ADAR1 Activation Drives Leukemia Stem Cell Self-Renewal by Impairing Let-7 Biogenesis.
Cell stem cell
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09 Jun 2016
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pubmed:27292188
Comprehensive characterization of programmed death ligand structural rearrangements in B-cell non-Hodgkin lymphomas.
Blood
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07 Jun 2016
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pubmed:27268263
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer
Nature Genetics
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16 May 2016
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doi:10.1038/ng.3573
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.
Nature genetics
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16 May 2016
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pubmed:27182968
Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress.
Oncotarget
·
10 May 2016
·
pubmed:27058758
miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer.
Oncotarget
·
03 May 2016
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pubmed:27036018
CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML.
Blood
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03 May 2016
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pubmed:27143256
Toward Personalized Lymphoma Immunotherapy: Identification of Common Driver Mutations Recognized by Patient CD8+ T Cells
Clinical Cancer Research
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01 May 2016
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doi:10.1158/1078-0432.ccr-15-2023
Response to angiotensin blockade with irbesartan in a patient with metastatic colorectal cancer
Annals of Oncology
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01 May 2016
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doi:10.1093/annonc/mdw060
Immunohistochemistry for NF2, LATS1/2, and YAP/TAZ Fails to Separate Benign From Malignant Mesothelial Proliferations.
Archives of pathology & laboratory medicine
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01 May 2016
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pubmed:27128293
A somatic reference standard for cancer genome sequencing
Scientific Reports
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20 Apr 2016
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doi:10.1038/srep24607
A somatic reference standard for cancer genome sequencing.
Scientific reports
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20 Apr 2016
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pubmed:27094764
Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress
Oncotarget
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05 Apr 2016
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doi:10.18632/oncotarget.8612
Tracking of Normal and Malignant Progenitor Cell Cycle Transit in a Defined Niche
Scientific Reports
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04 Apr 2016
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doi:10.1038/srep23885
Tracking of Normal and Malignant Progenitor Cell Cycle Transit in a Defined Niche.
Scientific reports
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04 Apr 2016
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pubmed:27041210
Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.
Cancer cell
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14 Mar 2016
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pubmed:26977886
Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencing
Molecular Case Studies
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01 Mar 2016
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doi:10.1101/mcs.a000679
Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways
Cancer Cell
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01 Mar 2016
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doi:10.1016/j.ccell.2016.02.009
Putative BRAF activating fusion in a medullary thyroid cancer.
Cold Spring Harbor molecular case studies
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01 Mar 2016
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pubmed:27148585
MEF2 transcription factors: developmental regulators and emerging cancer genes.
Oncotarget
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19 Jan 2016
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pubmed:26506234
Clinical impact of molecular features in diffuse large B-cell lymphoma and follicular lymphoma
Blood
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14 Jan 2016
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doi:10.1182/blood-2015-07-658401
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma
New England Journal of Medicine
·
14 Jan 2016
·
doi:10.1056/NEJMoa1505917
Divergent clonal selection dominates medulloblastoma at recurrence.
Nature
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13 Jan 2016
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pubmed:26760213
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma
Cell
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01 Jan 2016
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doi:10.1016/j.cell.2015.12.028
Divergent clonal selection dominates medulloblastoma at recurrence
Nature
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01 Jan 2016
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doi:10.1038/nature16478
2015
Putative BRAF activating fusion in a medullary thyroid cancer
Molecular Case Studies
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23 Dec 2015
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doi:10.1101/mcs.a000729
The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy.
BMC cancer
·
18 Dec 2015
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pubmed:26680454
MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours
Nature Communications
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04 Dec 2015
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doi:10.1038/ncomms10013
MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours.
Nature communications
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04 Dec 2015
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pubmed:26635203
Toward Personalized Lymphoma Immunotherapy: Identification of Common Driver Mutations Recognized by Patient CD8+ T Cells.
Clinical cancer research : an official journal of the American Association for Cancer Research
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02 Dec 2015
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pubmed:26631611
The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy
BMC Cancer
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01 Dec 2015
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doi:10.1186/s12885-015-1955-9
Reversion to an embryonic alternative splicing program enhances leukemia stem cell self-renewal
Proceedings of the National Academy of Sciences
·
30 Nov 2015
·
doi:10.1073/pnas.1506943112
Reversion to an embryonic alternative splicing program enhances leukemia stem cell self-renewal.
Proceedings of the National Academy of Sciences of the United States of America
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30 Nov 2015
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pubmed:26621726
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.
The New England journal of medicine
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04 Nov 2015
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pubmed:26536169
SOX9 modulates the expression of key transcription factors required for heart valve development.
Development (Cambridge, England)
·
02 Nov 2015
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pubmed:26525672
The Molecular Taxonomy of Primary Prostate Cancer
Cell
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01 Nov 2015
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doi:10.1016/j.cell.2015.10.025
Cell of origin of transformed follicular lymphoma
Blood
·
29 Oct 2015
·
doi:10.1182/BLOOD-2015-06-649905
MEF2 transcription factors: developmental regulators and emerging cancer genes
Oncotarget
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25 Oct 2015
·
doi:10.18632/oncotarget.6223
Clinical impact of molecular features in diffuse large B-cell lymphoma and follicular lymphoma.
Blood
·
07 Oct 2015
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pubmed:26447189
Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer
Cell
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01 Oct 2015
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doi:10.1016/j.cell.2015.09.033
Lessons learned from the application of whole-genome analysis to the treatment of patients with advanced cancers.
Cold Spring Harbor molecular case studies
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01 Oct 2015
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pubmed:27148575
Lessons learned from the application of whole-genome analysis to the treatment of patients with advanced cancers
Molecular Case Studies
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24 Sep 2015
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doi:10.1101/mcs.a000570
Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?
Cancers
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23 Sep 2015
·
doi:10.3390/cancers7030869
Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?
Cancers
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23 Sep 2015
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pubmed:26404381
Integrative genomic analysis of ghost cell odontogenic carcinoma
Oral Oncology
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01 Sep 2015
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doi:10.1016/j.oraloncology.2015.06.013
Cell of origin of transformed follicular lymphoma.
Blood
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25 Aug 2015
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pubmed:26307535
Large-scale profiling of microRNAs for The Cancer Genome Atlas
Nucleic Acids Research
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13 Aug 2015
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doi:10.1093/nar/gkv808
Large-scale profiling of microRNAs for The Cancer Genome Atlas.
Nucleic acids research
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13 Aug 2015
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pubmed:26271990
MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation
Nature Communications
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06 Aug 2015
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doi:10.1038/ncomms8953
MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation.
Nature communications
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06 Aug 2015
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pubmed:26245647
Comparative genomic and genetic analysis of glioblastoma-derived brain tumor-initiating cells and their parent tumors
Neuro-Oncology
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05 Aug 2015
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doi:10.1093/neuonc/nov143
Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development
BMC Genomics
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24 Jul 2015
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doi:10.1186/s12864-015-1770-3
Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development.
BMC genomics
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24 Jul 2015
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pubmed:26204903
Integrative genomic analysis of ghost cell odontogenic carcinoma.
Oral oncology
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11 Jul 2015
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pubmed:26173781
Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes
Stem Cell Reports
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01 Jul 2015
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doi:10.1016/j.stemcr.2015.05.010
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas
New England Journal of Medicine
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25 Jun 2015
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doi:10.1056/NEJMoa1402121
Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes.
Stem cell reports
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18 Jun 2015
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pubmed:26095605
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.
The New England journal of medicine
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10 Jun 2015
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Genomic Classification of Cutaneous Melanoma
Cell
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01 Jun 2015
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doi:10.1016/j.cell.2015.05.044
The Drosophila TIPE family member Sigmar interacts with the Ste20-like kinase Misshapen and modulates JNK signaling, cytoskeletal remodeling and autophagy
Biology Open
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15 May 2015
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doi:10.1242/bio.20148417
The Drosophila TIPE family member Sigmar interacts with the Ste20-like kinase Misshapen and modulates JNK signaling, cytoskeletal remodeling and autophagy.
Biology open
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02 Apr 2015
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pubmed:25836674
MEN1 Mutations in Hürthle Cell (Oncocytic) Thyroid Carcinoma
The Journal of Clinical Endocrinology & Metabolism
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01 Apr 2015
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doi:10.1210/jc.2014-3622
Use of Affymetrix Arrays in the Diagnosis of Gene Copy-Number Variation.
Current protocols in human genetics
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01 Apr 2015
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Recurrent genomic rearrangements in primary testicular lymphoma
The Journal of Pathology
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26 Mar 2015
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doi:10.1002/path.4522
Recurrent genomic rearrangements in primary testicular lymphoma.
The Journal of pathology
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26 Mar 2015
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pubmed:25712539
Personalized Oncogenomics: Clinical Experience with Malignant Peritoneal Mesothelioma Using Whole Genome Sequencing
PLOS ONE
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23 Mar 2015
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doi:10.1371/journal.pone.0119689
Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden
The Journal of Pathology
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23 Mar 2015
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doi:10.1002/path.4516
Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden.
The Journal of pathology
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23 Mar 2015
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pubmed:25692284
Personalized oncogenomics: clinical experience with malignant peritoneal mesothelioma using whole genome sequencing.
PloS one
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23 Mar 2015
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pubmed:25798586
GLI2 inhibition abrogates human leukemia stem cell dormancy
Journal of Translational Medicine
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21 Mar 2015
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doi:10.1186/s12967-015-0453-9
GLI2 inhibition abrogates human leukemia stem cell dormancy.
Journal of translational medicine
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21 Mar 2015
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pubmed:25889765
Integrative analysis of 111 reference human epigenomes.
Nature
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19 Feb 2015
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pubmed:25693563
Integrative analysis of 111 reference human epigenomes
Nature
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18 Feb 2015
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doi:10.1038/nature14248
Intermediate DNA methylation is a conserved signature of genome regulation
Nature Communications
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18 Feb 2015
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doi:10.1038/ncomms7363
Epigenetic and transcriptional determinants of the human breast
Nature Communications
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18 Feb 2015
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doi:10.1038/ncomms7351
Epigenetic and transcriptional determinants of the human breast.
Nature communications
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18 Feb 2015
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pubmed:25690954
Intermediate DNA methylation is a conserved signature of genome regulation.
Nature communications
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18 Feb 2015
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Recurrent DGCR8, DROSHA, and SIX homeodomain mutations in favorable histology Wilms tumors.
Cancer cell
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09 Feb 2015
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pubmed:25670082
An RCOR1 loss–associated gene expression signature identifies a prognostically significant DLBCL subgroup
Blood
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05 Feb 2015
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doi:10.1182/BLOOD-2013-06-507152
Recurrent DGCR8, DROSHA, and SIX Homeodomain Mutations in Favorable Histology Wilms Tumors
Cancer Cell
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01 Feb 2015
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doi:10.1016/J.CCELL.2015.01.003
Comprehensive miRNA sequence analysis reveals survival differences in diffuse large B-cell lymphoma patients.
Genome biology
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29 Jan 2015
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pubmed:25723320
Comprehensive genomic characterization of head and neck squamous cell carcinomas
Nature
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28 Jan 2015
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doi:10.1038/NATURE14129
MEN1 mutations in Hürthle cell (oncocytic) thyroid carcinoma.
The Journal of clinical endocrinology and metabolism
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27 Jan 2015
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pubmed:25625803
A subject-specific musculoskeletal modeling framework to predict in vivo mechanics of total knee arthroplasty.
Journal of biomechanical engineering
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26 Jan 2015
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pubmed:25429519
The Release 6 reference sequence of the Drosophila melanogaster genome
Genome Research
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14 Jan 2015
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doi:10.1101/gr.185579.114
SOX9 modulates the expression of key transcription factors required for heart valve development
Development
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01 Jan 2015
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doi:10.1242/dev.125252
Cross-cancer profiling of molecular alterations within the human autophagy interaction network.
Autophagy
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01 Jan 2015
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2014
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
Nature
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26 Nov 2014
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doi:10.1038/nature13952
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.
Nature
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26 Nov 2014
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pubmed:25470049
Regulatory network decoded from epigenomes of surface ectoderm-derived cell types
Nature Communications
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25 Nov 2014
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doi:10.1038/NCOMMS6442
Regulatory network decoded from epigenomes of surface ectoderm-derived cell types.
Nature communications
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25 Nov 2014
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pubmed:25421844
An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup.
Blood
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13 Nov 2014
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Driver and passenger mutations in cancer.
Annual review of pathology
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17 Oct 2014
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pubmed:25340638
Characterization of HPV and host genome interactions in primary head and neck cancers
Proceedings of the National Academy of Sciences
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13 Oct 2014
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doi:10.1073/PNAS.1416074111
Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation.
Cell reports
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25 Sep 2014
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pubmed:25263553
Mutations in CIC and IDH1 cooperatively regulate 2-hydroxyglutarate levels and cell clonogenicity.
Oncotarget
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15 Sep 2014
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pubmed:25277207
The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma
Cancer Cell
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01 Sep 2014
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doi:10.1016/J.CCR.2014.07.014
The molecular landscape of pediatric brain tumors in the next-generation sequencing era.
Current neurology and neuroscience reports
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01 Sep 2014
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pubmed:25037717
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
Genome Research
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24 Jul 2014
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doi:10.1101/GR.180281.114
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.
Genome research
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24 Jul 2014
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pubmed:25060187
The Molecular Landscape of Pediatric Brain Tumors in the Next-Generation Sequencing Era
Current Neurology and Neuroscience Reports
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20 Jul 2014
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doi:10.1007/S11910-014-0474-4
Quiescent Sox2+ Cells Drive Hierarchical Growth and Relapse in Sonic Hedgehog Subgroup Medulloblastoma
Cancer Cell
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01 Jul 2014
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doi:10.1016/J.CCR.2014.05.005
A transgenic mouse model demonstrating the oncogenic role of mutations in the polycomb-group gene EZH2 in lymphomagenesis
Blood
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19 Jun 2014
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doi:10.1182/BLOOD-2012-12-473439
Quiescent sox2(+) cells drive hierarchical growth and relapse in sonic hedgehog subgroup medulloblastoma.
Cancer cell
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19 Jun 2014
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pubmed:24954133
Diagnostic value of next-generation sequencing in an unusual sphenoid tumor.
The oncologist
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07 May 2014
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pubmed:24807916
A transgenic mouse model demonstrating the oncogenic role of mutations in the polycomb-group gene EZH2 in lymphomagenesis.
Blood
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06 May 2014
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pubmed:24802772
Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation
PLoS Genetics
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17 Apr 2014
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doi:10.1371/JOURNAL.PGEN.1004261
A Notch‐dependent transcriptional hierarchy promotes mesenchymal transdifferentiation in the cardiac cushion
Developmental Dynamics
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17 Apr 2014
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doi:10.1002/DVDY.24127
A Notch-dependent transcriptional hierarchy promotes mesenchymal transdifferentiation in the cardiac cushion.
Developmental dynamics : an official publication of the American Association of Anatomists
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17 Apr 2014
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pubmed:24633789
Small cell carcinoma of the ovary, hypercalcemic type, displays frequent inactivating germline and somatic mutations in SMARCA4
Nature Genetics
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23 Mar 2014
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doi:10.1038/NG.2928
Small cell carcinoma of the ovary, hypercalcemic type, displays frequent inactivating germline and somatic mutations in SMARCA4.
Nature genetics
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23 Mar 2014
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pubmed:24658001
The expression level of small non‐coding
RNA
s derived from the first exon of protein‐coding genes is predictive of cancer status
EMBO reports
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17 Feb 2014
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doi:10.1002/EMBR.201337950
Recurrent somatic mutations of PTPN1 in primary mediastinal B cell lymphoma and Hodgkin lymphoma
Nature Genetics
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16 Feb 2014
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doi:10.1038/NG.2900
Recurrent somatic mutations of PTPN1 in primary mediastinal B cell lymphoma and Hodgkin lymphoma.
Nature genetics
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16 Feb 2014
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pubmed:24531327
2013
Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma.
Science (New York, N.Y.)
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12 Dec 2013
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pubmed:24336570
Single exon-resolution targeted chromosomal microarray analysis of known and candidate intellectual disability genes
European Journal of Human Genetics
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20 Nov 2013
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doi:10.1038/EJHG.2013.248
A Clinically Validated Diagnostic Second-Generation Sequencing Assay for Detection of Hereditary BRCA1 and BRCA2 Mutations
The Journal of Molecular Diagnostics
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01 Nov 2013
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doi:10.1016/J.JMOLDX.2013.07.004
Genomic testing to determine drug response: measuring preferences of the public and patients using Discrete Choice Experiment (DCE).
BMC health services research
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31 Oct 2013
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pubmed:24176050
A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.
The Journal of molecular diagnostics : JMD
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04 Oct 2013
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pubmed:24094589
The Somatic Genomic Landscape of Glioblastoma
Cell
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01 Oct 2013
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doi:10.1016/J.CELL.2013.09.034
A Phosphoproteomics Approach to Identify Candidate Kinase Inhibitor Pathway Targets in Lymphoma-Like Primary Cell Lines
Current Drug Discovery Technologies
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01 Oct 2013
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doi:10.2174/15701638113109990001
The Cancer Genome Atlas Pan-Cancer analysis project
Nature Genetics
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26 Sep 2013
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doi:10.1038/NG.2764
Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling.
The Journal of pathology
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01 Sep 2013
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pubmed:23780408
Complete genomic landscape of a recurring sporadic parathyroid carcinoma.
The Journal of pathology
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01 Jul 2013
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pubmed:23616356
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.
Genome research
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26 Jun 2013
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pubmed:23804400
Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.
Genome research
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26 Jun 2013
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pubmed:23804401
Complete genomic landscape of a recurring sporadic parathyroid carcinoma
The Journal of Pathology
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07 Jun 2013
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doi:10.1002/PATH.4203
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.
Nature genetics
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26 May 2013
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pubmed:23708189
Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing.
Blood
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22 May 2013
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pubmed:23699601
Analysis of FOXO1 mutations in diffuse large B-cell lymphoma
Blood
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02 May 2013
·
doi:10.1182/BLOOD-2013-01-479865
Cancer genome-sequencing study design.
Nature reviews. Genetics
·
01 May 2013
·
pubmed:23594910
Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.
The New England journal of medicine
·
01 May 2013
·
pubmed:23634996
Genome-wide microRNA and messenger RNA profiling in rodent liver development implicates mir302b and mir20a in repressing transforming growth factor-beta signaling.
Hepatology (Baltimore, Md.)
·
26 Apr 2013
·
pubmed:23315977
The E3 ubiquitin ligase UBR5 is recurrently mutated in mantle cell lymphoma
Blood
·
18 Apr 2013
·
doi:10.1182/BLOOD-2013-01-478834
Cancer genome-sequencing study design
Nature Reviews Genetics
·
18 Apr 2013
·
doi:10.1038/NRG3445
Analysis of FOXO1 mutations in diffuse large B-cell lymphoma.
Blood
·
04 Mar 2013
·
pubmed:23460611
A Pan-BCL2 Inhibitor Renders Bone-Marrow-Resident Human Leukemia Stem Cells Sensitive to Tyrosine Kinase Inhibition
Cell Stem Cell
·
01 Mar 2013
·
doi:10.1016/J.STEM.2012.12.011
A Cancer Stem Cell Model for Studying Brain Metastases From Primary Lung Cancer
JNCI: Journal of the National Cancer Institute
·
15 Feb 2013
·
doi:10.1093/JNCI/DJT022
The E3 ubiquitin ligase UBR5 is recurrently mutated in mantle cell lymphoma.
Blood
·
13 Feb 2013
·
pubmed:23407552
The genetic landscape of high-risk neuroblastoma
Nature Genetics
·
20 Jan 2013
·
doi:10.1038/NG.2529
The genetic landscape of high-risk neuroblastoma.
Nature genetics
·
20 Jan 2013
·
pubmed:23334666
Cell culture andDrosophilamodel systems define three classes of anaplastic lymphoma kinase mutations in neuroblastoma
Disease Models & Mechanisms
·
01 Jan 2013
·
doi:10.1242/DMM.010348
2012
ADAR1 promotes malignant progenitor reprogramming in chronic myeloid leukemia
Proceedings of the National Academy of Sciences
·
28 Dec 2012
·
doi:10.1073/PNAS.1213021110
ADAR1 promotes malignant progenitor reprogramming in chronic myeloid leukemia.
Proceedings of the National Academy of Sciences of the United States of America
·
28 Dec 2012
·
pubmed:23275297
Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma
Acta Neuropathologica
·
25 Nov 2012
·
doi:10.1007/S00401-012-1070-9
Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma.
Acta neuropathologica
·
25 Nov 2012
·
pubmed:23184418
Recurrent targets of aberrant somatic hypermutation in lymphoma
Oncotarget
·
12 Nov 2012
·
doi:10.18632/ONCOTARGET.653
Recurrent targets of aberrant somatic hypermutation in lymphoma.
Oncotarget
·
01 Nov 2012
·
pubmed:23131835
Cell culture and Drosophila model systems define three classes of anaplastic lymphoma kinase mutations in neuroblastoma.
Disease models & mechanisms
·
25 Oct 2012
·
pubmed:23104988
Interaction of cyclin-dependent kinase 12/CrkRS with cyclin K1 is required for the phosphorylation of the C-terminal domain of RNA polymerase II.
Molecular and cellular biology
·
17 Sep 2012
·
pubmed:22988298
Comprehensive genomic characterization of squamous cell lung cancers
Nature
·
09 Sep 2012
·
doi:10.1038/NATURE11404
Poly‐gene fusion transcripts and chromothripsis in prostate cancer
Genes, Chromosomes and Cancer
·
25 Aug 2012
·
doi:10.1002/GCC.21999
Poly-gene fusion transcripts and chromothripsis in prostate cancer.
Genes, chromosomes & cancer
·
25 Aug 2012
·
pubmed:22927308
Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors.
PloS one
·
16 Aug 2012
·
pubmed:22916110
Genetic alterations activating kinase and cytokine receptor signaling in high-risk acute lymphoblastic leukemia.
Cancer cell
·
14 Aug 2012
·
pubmed:22897847
Subgroup-specific structural variation across 1,000 medulloblastoma genomes.
Nature
·
02 Aug 2012
·
pubmed:22832581
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
Nature
·
25 Jul 2012
·
doi:10.1038/NATURE11327
Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse.
PloS one
·
16 Jul 2012
·
pubmed:22815831
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.
The Journal of pathology
·
01 Jul 2012
·
pubmed:22553170
Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer.
Genome research
·
25 May 2012
·
pubmed:22637570
TBL1XR1/TP63: a novel recurrent gene fusion in B-cell non-Hodgkin lymphoma
Blood
·
24 May 2012
·
doi:10.1182/BLOOD-2012-02-414441
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data
Bioinformatics
·
04 May 2012
·
doi:10.1093/BIOINFORMATICS/BTS272
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
Bioinformatics (Oxford, England)
·
04 May 2012
·
pubmed:22563071
Barriers to integrating personalized medicine into clinical practice: a best–worst scaling choice experiment
Genetics in Medicine
·
01 May 2012
·
doi:10.1038/GIM.2011.26
TBL1XR1/TP63: a novel recurrent gene fusion in B-cell non-Hodgkin lymphoma.
Blood
·
11 Apr 2012
·
pubmed:22496164
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
Nature
·
04 Apr 2012
·
doi:10.1038/NATURE10933
The clonal and mutational evolution spectrum of primary triple-negative breast cancers.
Nature
·
04 Apr 2012
·
pubmed:22495314
Allelic Ratios and the Mutational Landscape Reveal Biologically Significant Heterozygous SNVs
Genetics
·
01 Apr 2012
·
doi:10.1534/GENETICS.111.137208
Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer.
The Journal of pathology
·
21 Mar 2012
·
pubmed:22294438
Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression
Human Molecular Genetics
·
28 Feb 2012
·
doi:10.1093/HMG/DDS083
Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression.
Human molecular genetics
·
28 Feb 2012
·
pubmed:22378147
Subgroup-specific alternative splicing in medulloblastoma
Acta Neuropathologica
·
23 Feb 2012
·
doi:10.1007/S00401-012-0959-7
Subgroup-specific alternative splicing in medulloblastoma.
Acta neuropathologica
·
23 Feb 2012
·
pubmed:22358458
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.
Bioinformatics (Oxford, England)
·
27 Jan 2012
·
pubmed:22285562
Recurrent SomaticDICER1Mutations in Nonepithelial Ovarian Cancers
New England Journal of Medicine
·
19 Jan 2012
·
doi:10.1056/NEJMOA1102903
14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma
Proceedings of the National Academy of Sciences
·
05 Jan 2012
·
doi:10.1073/PNAS.1115528109
14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma.
Proceedings of the National Academy of Sciences of the United States of America
·
05 Jan 2012
·
pubmed:22223660
2011
Whole transcriptome sequencing reveals recurrent NOTCH1 mutations in mantle cell lymphoma.
Blood
·
30 Dec 2011
·
pubmed:22210878
BCL2 mutations in diffuse large B-cell lymphoma
Leukemia
·
22 Dec 2011
·
doi:10.1038/LEU.2011.378
Recurrent somatic DICER1 mutations in nonepithelial ovarian cancers.
The New England journal of medicine
·
21 Dec 2011
·
pubmed:22187960
Mutations in EZH2 cause Weaver syndrome.
American journal of human genetics
·
15 Dec 2011
·
pubmed:22177091
Hive plots--rational approach to visualizing networks.
Briefings in bioinformatics
·
09 Dec 2011
·
pubmed:22155641
Next-generation sequencing of prostate tumors provides independent evidence of xenotropic murine leukemia virus-related gammaretrovirus contamination.
Journal of clinical microbiology
·
07 Dec 2011
·
pubmed:22162557
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.
Bioinformatics (Oxford, England)
·
13 Nov 2011
·
pubmed:22084253
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.
The Journal of pathology
·
10 Nov 2011
·
pubmed:22072542
Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples
Acta Neuropathologica
·
06 Nov 2011
·
doi:10.1007/S00401-011-0899-7
Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells
Blood
·
22 Sep 2011
·
doi:10.1182/BLOOD-2010-10-312454
Using next-generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities.
The Journal of pathology
·
01 Sep 2011
·
pubmed:21792934
Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance
Experimental Hematology
·
01 Aug 2011
·
doi:10.1016/J.EXPHEM.2011.05.008
High-throughput microfluidic single-cell RT-qPCR.
Proceedings of the National Academy of Sciences of the United States of America
·
01 Aug 2011
·
pubmed:21808033
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.
Nature
·
27 Jul 2011
·
pubmed:21796119
Cell of Origin in AML: Susceptibility to MN1-Induced Transformation Is Regulated by the MEIS1/AbdB-like HOX Protein Complex
Cancer Cell
·
01 Jul 2011
·
doi:10.1016/J.CCR.2011.06.020
Extensive relationship between antisense transcription and alternative splicing in the human genome.
Genome research
·
30 Jun 2011
·
pubmed:21719572
Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells.
Blood
·
31 May 2011
·
pubmed:21628414
Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance.
Experimental hematology
·
27 May 2011
·
pubmed:21689726
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
PLoS computational biology
·
19 May 2011
·
pubmed:21625565
Comparison of genome-wide array genomic hybridization platforms for the detection of copy number variants in idiopathic mental retardation
BMC Medical Genomics
·
25 Mar 2011
·
doi:10.1186/1755-8794-4-25
MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers.
Nature
·
02 Mar 2011
·
pubmed:21368758
Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation
Blood
·
24 Feb 2011
·
doi:10.1182/BLOOD-2010-11-321208
Characterization of the Contradictory Chromatin Signatures at the 3′ Exons of Zinc Finger Genes
PLoS ONE
·
15 Feb 2011
·
doi:10.1371/JOURNAL.PONE.0017121
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.
PloS one
·
15 Feb 2011
·
pubmed:21347206
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen.
Proceedings of the National Academy of Sciences of the United States of America
·
24 Jan 2011
·
pubmed:21262841
2010
Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation.
Blood
·
29 Dec 2010
·
pubmed:21190999
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.
Genome research
·
22 Dec 2010
·
pubmed:21177969
Hypomorphic temperature-sensitive alleles of NSDHL cause CK syndrome.
American journal of human genetics
·
10 Dec 2010
·
pubmed:21129721
BCL6 repression of EP300 in human diffuse large B cell lymphoma cells provides a basis for rational combinatorial therapy
Journal of Clinical Investigation
·
01 Dec 2010
·
doi:10.1172/JCI42869
Next generation sequencing based approaches to epigenomics.
Briefings in functional genomics
·
01 Dec 2010
·
pubmed:21266347
Acquired TNFRSF14 Mutations in Follicular Lymphoma Are Associated with Worse Prognosis
Cancer Research
·
14 Nov 2010
·
doi:10.1158/0008-5472.CAN-10-2460
Convergent genesis of an adult neural crest-like dermal stem cell from distinct developmental origins.
Stem cells (Dayton, Ohio)
·
01 Nov 2010
·
pubmed:20848654
ARID1AMutations in Endometriosis-Associated Ovarian Carcinomas
New England Journal of Medicine
·
14 Oct 2010
·
doi:10.1056/NEJMOA1008433
De novo assembly and analysis of RNA-seq data
Nature Methods
·
10 Oct 2010
·
doi:10.1038/NMETH.1517
De novo assembly and analysis of RNA-seq data.
Nature methods
·
10 Oct 2010
·
pubmed:20935650
The NIH Roadmap Epigenomics Mapping Consortium
Nature Biotechnology
·
01 Oct 2010
·
doi:10.1038/NBT1010-1045
ATR-X Syndrome Protein Targets Tandem Repeats and Influences Allele-Specific Expression in a Size-Dependent Manner
Cell
·
01 Oct 2010
·
doi:10.1016/J.CELL.2010.09.023
The NIH Roadmap Epigenomics Mapping Consortium.
Nature biotechnology
·
01 Oct 2010
·
pubmed:20944595
Acquired TNFRSF14 mutations in follicular lymphoma are associated with worse prognosis.
Cancer research
·
30 Sep 2010
·
pubmed:20884631
LNCaP Atlas: gene expression associated with in vivo progression to castration-recurrent prostate cancer.
BMC medical genomics
·
24 Sep 2010
·
pubmed:20868494
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
Nature Biotechnology
·
19 Sep 2010
·
doi:10.1038/NBT.1682
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
Nature biotechnology
·
19 Sep 2010
·
pubmed:20852635
System-Level Analysis of Neuroblastoma Tumor–Initiating Cells Implicates AURKB as a Novel Drug Target for Neuroblastoma
Clinical Cancer Research
·
14 Sep 2010
·
doi:10.1158/1078-0432.CCR-10-0627
Alternative expression analysis by RNA sequencing
Nature Methods
·
12 Sep 2010
·
doi:10.1038/NMETH.1503
Alternative expression analysis by RNA sequencing.
Nature methods
·
12 Sep 2010
·
pubmed:20835245
ARID1A mutations in endometriosis-associated ovarian carcinomas.
The New England journal of medicine
·
08 Sep 2010
·
pubmed:20942669
Selective targeting of neuroblastoma tumour-initiating cells by compounds identified in stem cell-based small molecule screens.
EMBO molecular medicine
·
01 Sep 2010
·
pubmed:20721990
Selective targeting of neuroblastoma tumour‐initiating cells by compounds identified in stem cell‐based small molecule screens
EMBO Molecular Medicine
·
18 Aug 2010
·
doi:10.1002/EMMM.201000093
Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors.
Genome biology
·
09 Aug 2010
·
pubmed:20696054
High resolution analysis of follicular lymphoma genomes reveals somatic recurrent sites of copy-neutral loss of heterozygosity and copy number alterations that target single genes.
Genes, chromosomes & cancer
·
01 Aug 2010
·
pubmed:20544841
System-level analysis of neuroblastoma tumor-initiating cells implicates AURKB as a novel drug target for neuroblastoma.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
22 Jul 2010
·
pubmed:20651058
Conserved role of intragenic DNA methylation in regulating alternative promoters.
Nature
·
08 Jul 2010
·
pubmed:20613842
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver.
Genome research
·
15 Jun 2010
·
pubmed:20551221
Whole-genome profiling of mutagenesis in Caenorhabditis elegans.
Genetics
·
03 May 2010
·
pubmed:20439774
MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing.
Molecular human reproduction
·
09 Mar 2010
·
pubmed:20215419
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
Bioinformatics
·
03 Feb 2010
·
doi:10.1093/BIOINFORMATICS/BTQ040
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors.
Bioinformatics (Oxford, England)
·
03 Feb 2010
·
pubmed:20130035
Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin
Nature Genetics
·
17 Jan 2010
·
doi:10.1038/NG.518
Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin.
Nature genetics
·
17 Jan 2010
·
pubmed:20081860
2009
SKPs Derive from Hair Follicle Precursors and Exhibit Properties of Adult Dermal Stem Cells
Cell Stem Cell
·
01 Dec 2009
·
doi:10.1016/J.STEM.2009.10.019
A first look at entire human methylomes
Nature Biotechnology
·
01 Dec 2009
·
doi:10.1038/NBT1209-1130
Genomic analysis distinguishes phases of early development of the mouse atrio-ventricular canal.
Physiological genomics
·
01 Dec 2009
·
pubmed:19952280
A first look at entire human methylomes.
Nature biotechnology
·
01 Dec 2009
·
pubmed:20010593
Detection of pathogenic copy number variants in children with idiopathic intellectual disability using 500 K SNP array genomic hybridization.
BMC genomics
·
16 Nov 2009
·
pubmed:19917086
A characteristic syndrome associated with microduplication of 8q12, inclusive of CHD7
European Journal of Medical Genetics
·
01 Nov 2009
·
doi:10.1016/J.EJMG.2009.09.006
Identification of novel androgen-responsive genes by sequencing of LongSAGE libraries.
BMC genomics
·
15 Oct 2009
·
pubmed:19832994
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.
Nature
·
08 Oct 2009
·
pubmed:19812674
The completion of the Mammalian Gene Collection (MGC)
Genome Research
·
18 Sep 2009
·
doi:10.1101/GR.095976.109
The completion of the Mammalian Gene Collection (MGC).
Genome research
·
18 Sep 2009
·
pubmed:19767417
A characteristic syndrome associated with microduplication of 8q12, inclusive of CHD7.
European journal of medical genetics
·
17 Sep 2009
·
pubmed:19772954
De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
Genome Biology
·
11 Sep 2009
·
doi:10.1186/GB-2009-10-9-R94
De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data.
Genome biology
·
11 Sep 2009
·
pubmed:19747388
Applications of New Sequencing Technologies for Transcriptome Analysis
Annual Review of Genomics and Human Genetics
·
01 Sep 2009
·
doi:10.1146/ANNUREV-GENOM-082908-145957
Genetic variation in healthy oldest-old.
PloS one
·
14 Aug 2009
·
pubmed:19680556
Sequence Variant Discovery in DNA Repair Genes from Radiosensitive and Radiotolerant Prostate Brachytherapy Patients
Clinical Cancer Research
·
29 Jul 2009
·
doi:10.1158/1078-0432.CCR-08-3357
Sequence variant discovery in DNA repair genes from radiosensitive and radiotolerant prostate brachytherapy patients.
Clinical cancer research : an official journal of the American Association for Cancer Research
·
28 Jul 2009
·
pubmed:19638463
An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans
PLoS Genetics
·
26 Jun 2009
·
doi:10.1371/JOURNAL.PGEN.1000537
An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans.
PLoS genetics
·
26 Jun 2009
·
pubmed:19557190
Prospective isolation and molecular characterization of hematopoietic stem cells with durable self-renewal potential
Blood
·
18 Jun 2009
·
doi:10.1182/BLOOD-2008-12-192054
Circos: An information aesthetic for comparative genomics
Genome Research
·
18 Jun 2009
·
doi:10.1101/GR.092759.109
Next-generation tag sequencing for cancer gene expression profiling.
Genome research
·
18 Jun 2009
·
pubmed:19541910
Circos: an information aesthetic for comparative genomics.
Genome research
·
18 Jun 2009
·
pubmed:19541911
De novo transcriptome assembly with ABySS
Bioinformatics
·
15 Jun 2009
·
doi:10.1093/BIOINFORMATICS/BTP367
De novo transcriptome assembly with ABySS.
Bioinformatics (Oxford, England)
·
15 Jun 2009
·
pubmed:19528083
A novel de novo 1.1 Mb duplication of 17q21.33 associated with cognitive impairment and other anomalies.
American journal of medical genetics. Part A
·
01 Jun 2009
·
pubmed:19449402
A novel de novo 1.1 Mb duplication of 17q21.33 associated with cognitive impairment and other anomalies
American Journal of Medical Genetics Part A
·
15 May 2009
·
doi:10.1002/AJMG.A.32827
Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE.
BMC genomics
·
09 May 2009
·
pubmed:19426519
The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
Science
·
24 Apr 2009
·
doi:10.1126/SCIENCE.1169588
The genome sequence of taurine cattle: a window to ruminant biology and evolution.
Science (New York, N.Y.)
·
24 Apr 2009
·
pubmed:19390049
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans.
Genome research
·
30 Jan 2009
·
pubmed:19181841
Applications of new sequencing technologies for transcriptome analysis.
Annual review of genomics and human genetics
·
01 Jan 2009
·
pubmed:19715439
2008
ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult.
Developmental biology
·
09 Dec 2008
·
pubmed:19111532
Applications of next-generation sequencing technologies in functional genomics
Genomics
·
01 Nov 2008
·
doi:10.1016/J.YGENO.2008.07.001
A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)
BMC Genomics
·
14 Oct 2008
·
doi:10.1186/1471-2164-9-484
A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).
BMC genomics
·
14 Oct 2008
·
pubmed:18854048
In-depth characterization of the microRNA transcriptome in a leukemia progression model.
Genome research
·
10 Oct 2008
·
pubmed:18849523
Use of Affymetrix mapping arrays in the diagnosis of gene copy number variation.
Current protocols in human genetics
·
01 Oct 2008
·
pubmed:18972373
Epigenetics and human disease.
The international journal of biochemistry & cell biology
·
24 Sep 2008
·
pubmed:18852064
A Seriation Approach for Visualization-Driven Discovery of Co-Expression Patterns in Serial Analysis of Gene Expression (SAGE) Data
PLoS ONE
·
12 Sep 2008
·
doi:10.1371/JOURNAL.PONE.0003205
A seriation approach for visualization-driven discovery of co-expression patterns in Serial Analysis of Gene Expression (SAGE) data.
PloS one
·
12 Sep 2008
·
pubmed:18787709
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding.
Genome research
·
11 Sep 2008
·
pubmed:18787082
Applications of next-generation sequencing technologies in functional genomics.
Genomics
·
24 Aug 2008
·
pubmed:18703132
Identification of a set of genes showing regionally enriched expression in the mouse brain.
BMC neuroscience
·
14 Jul 2008
·
pubmed:18625066
Transcriptome analysis for Caenorhabditis elegansbased on novel expressed sequence tags
BMC Biology
·
08 Jul 2008
·
doi:10.1186/1741-7007-6-30
Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.
BMC biology
·
08 Jul 2008
·
pubmed:18611272
Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.
Nucleic acids research
·
08 Jul 2008
·
pubmed:18611952
Transcriptome Analysis of the Normal Human Mammary Cell Commitment and Differentiation Process
Cell Stem Cell
·
01 Jul 2008
·
doi:10.1016/J.STEM.2008.05.018
Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing
BioTechniques
·
01 Jul 2008
·
doi:10.2144/000112900
Identification of transcripts with enriched expression in the developing and adult pancreas.
Genome biology
·
14 Jun 2008
·
pubmed:18554416
From cytogenetics to next-generation sequencing technologies: advances in the detection of genome rearrangements in tumors.
Biochemistry and cell biology = Biochimie et biologie cellulaire
·
01 Apr 2008
·
pubmed:18443621
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
Genome Research
·
19 Feb 2008
·
doi:10.1101/GR.7179508
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells.
Genome research
·
19 Feb 2008
·
pubmed:18285502
ALEXA: a microarray design platform for alternative expression analysis
Nature Methods
·
01 Feb 2008
·
doi:10.1038/NMETH0208-118
ALEXA: a microarray design platform for alternative expression analysis.
Nature methods
·
01 Feb 2008
·
pubmed:18235430
Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
BMC Genomics
·
29 Jan 2008
·
doi:10.1186/1471-2164-9-57
Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
BMC genomics
·
29 Jan 2008
·
pubmed:18230180
2007
A patient with vertebral, cognitive and behavioural abnormalities and a de novo deletion of NRXN1
Journal of Medical Genetics
·
21 Dec 2007
·
doi:10.1136/JMG.2007.054437
A BAC clone fingerprinting approach to the detection of human genome rearrangements
Genome Biology
·
22 Oct 2007
·
doi:10.1186/GB-2007-8-10-R224
Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
BMC Bioinformatics
·
02 Oct 2007
·
doi:10.1186/1471-2105-8-368
Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data.
BMC bioinformatics
·
02 Oct 2007
·
pubmed:17910767
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans.
PLoS biology
·
01 Sep 2007
·
pubmed:17850180
Identification and analysis of internal promoters in Caenorhabditis elegans operons.
Genome research
·
21 Aug 2007
·
pubmed:17712020
A physical map of the bovine genome
Genome Biology
·
14 Aug 2007
·
doi:10.1186/GB-2007-8-8-R165
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)
BMC Developmental Biology
·
02 Aug 2007
·
doi:10.1186/1471-213X-7-92
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE).
BMC developmental biology
·
02 Aug 2007
·
pubmed:17683524
Correlations of EGFR mutations and increases in EGFR and HER2 copy number to gefitinib response in a retrospective analysis of lung cancer patients.
BMC cancer
·
13 Jul 2007
·
pubmed:17626639
The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron
Genes & Development
·
01 Jul 2007
·
doi:10.1101/GAD.1560107
A Modified Polymerase Chain Reaction‐Long Serial Analysis of Gene Expression Protocol Identifies Novel Transcripts in Human CD34
+
Bone Marrow Cells
STEM CELLS
·
01 Jul 2007
·
doi:10.1634/STEMCELLS.2006-0794
The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron.
Genes & development
·
01 Jul 2007
·
pubmed:17606643
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Genome Research
·
01 Jun 2007
·
doi:10.1101/GR.6034307
Novel deletions of 14q11.2 associated with developmental delay, cognitive impairment and similar minor anomalies in three children.
Journal of medical genetics
·
01 Jun 2007
·
pubmed:17545556
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
Genome research
·
01 Jun 2007
·
pubmed:17567995
A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation
The Plant Journal
·
23 May 2007
·
doi:10.1111/J.1365-313X.2007.03112.X
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.
Nature
·
10 May 2007
·
pubmed:17495919
A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.
The Plant journal : for cell and molecular biology
·
03 May 2007
·
pubmed:17488239
Genes that may modulate longevity in C. elegans in both dauer larvae and long-lived daf-2 adults.
Experimental gerontology
·
21 Apr 2007
·
pubmed:17543485
Evolutionary and biomedical insights from the rhesus macaque genome.
Science (New York, N.Y.)
·
13 Apr 2007
·
pubmed:17431167
A modified polymerase chain reaction-long serial analysis of gene expression protocol identifies novel transcripts in human CD34+ bone marrow cells.
Stem cells (Dayton, Ohio)
·
05 Apr 2007
·
pubmed:17412892
Large-scale BAC clone restriction digest fingerprinting.
Current protocols in human genetics
·
01 Apr 2007
·
pubmed:18428413
The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine
Developmental Biology
·
01 Feb 2007
·
doi:10.1016/J.YDBIO.2006.10.024
Novel expressed sequences identified in a model of androgen independent prostate cancer.
BMC genomics
·
26 Jan 2007
·
pubmed:17257419
Osteopoikilosis, short stature and mental retardation as key features of a new microdeletion syndrome on 12q14.
Journal of medical genetics
·
12 Jan 2007
·
pubmed:17220210
LongSAGE profiling of nine human embryonic stem cell lines.
Genome biology
·
01 Jan 2007
·
pubmed:17570852
A physical map of the bovine genome.
Genome biology
·
01 Jan 2007
·
pubmed:17697342
2006
Identification of ciliary and ciliopathy genes in Caenorhabditis elegansthrough comparative genomics
Genome Biology
·
22 Dec 2006
·
doi:10.1186/GB-2006-7-12-R126
Identification of Novel Lung Genes in Bronchial Epithelium by Serial Analysis of Gene Expression
American Journal of Respiratory Cell and Molecular Biology
·
01 Dec 2006
·
doi:10.1165/RCMB.2006-0056OC
Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.
Genome research
·
29 Nov 2006
·
pubmed:17135571
The Genome of the Sea Urchin
Strongylocentrotus purpuratus
Science
·
10 Nov 2006
·
doi:10.1126/SCIENCE.1133609
The genome of the sea urchin Strongylocentrotus purpuratus.
Science (New York, N.Y.)
·
10 Nov 2006
·
pubmed:17095691
The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine.
Developmental biology
·
21 Oct 2006
·
pubmed:17113066
The complete genome of
Rhodococcus
sp. RHA1 provides insights into a catabolic powerhouse
Proceedings of the National Academy of Sciences
·
17 Oct 2006
·
doi:10.1073/PNAS.0607048103
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.
Proceedings of the National Academy of Sciences of the United States of America
·
09 Oct 2006
·
pubmed:17030794
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
BMC Genomics
·
29 Sep 2006
·
doi:10.1186/1471-2164-7-246
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.
BMC genomics
·
29 Sep 2006
·
pubmed:17010196
The Genome of Black Cottonwood,
Populus trichocarpa
(Torr. & Gray)
Science
·
15 Sep 2006
·
doi:10.1126/SCIENCE.1128691
Oligonucleotide Microarray Analysis of Genomic Imbalance in Children with Mental Retardation
The American Journal of Human Genetics
·
01 Sep 2006
·
doi:10.1086/507471
Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals
Fungal Genetics and Biology
·
01 Sep 2006
·
doi:10.1016/J.FGB.2006.04.002
Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome.
Plant, cell & environment
·
01 Aug 2006
·
pubmed:16898017
Oligonucleotide microarray analysis of genomic imbalance in children with mental retardation.
American journal of human genetics
·
25 Jul 2006
·
pubmed:16909388
Sequence biases in large scale gene expression profiling data
Nucleic Acids Research
·
19 Jul 2006
·
doi:10.1093/NAR/GKL404
Sequence biases in large scale gene expression profiling data.
Nucleic acids research
·
13 Jul 2006
·
pubmed:16840527
Identification of genes targeted by the androgen and PKA signaling pathways in prostate cancer cells
Oncogene
·
05 Jun 2006
·
doi:10.1038/SJ.ONC.1209715
Physical map-assisted whole-genome shotgun sequence assemblies
Genome Research
·
01 Jun 2006
·
doi:10.1101/GR.5090606
Physical map-assisted whole-genome shotgun sequence assemblies.
Genome research
·
01 Jun 2006
·
pubmed:16741162
Sequencing and analysis of 10,967 full-length cDNA clones fromXenopus laevisandXenopus tropicalisreveals post-tetraploidization transcriptome remodeling
Genome Research
·
03 May 2006
·
doi:10.1101/GR.4871006
Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling.
Genome research
·
03 May 2006
·
pubmed:16672307
Genomics of hybrid poplar (Populus trichocarpa× deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full‐length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect‐induced defences in poplar
Molecular Ecology
·
01 Apr 2006
·
doi:10.1111/J.1365-294X.2006.02824.X
Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar.
Molecular ecology
·
01 Apr 2006
·
pubmed:16626454
2005
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
Genome Research
·
19 Dec 2005
·
doi:10.1101/GR.4456006
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla.
Genome research
·
19 Dec 2005
·
pubmed:16365383
A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells
Proceedings of the National Academy of Sciences
·
13 Dec 2005
·
doi:10.1073/PNAS.0509455102
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.
Proceedings of the National Academy of Sciences of the United States of America
·
13 Dec 2005
·
pubmed:16352711
A high-resolution whole-genome cattle–human comparative map reveals details of mammalian chromosome evolution
Proceedings of the National Academy of Sciences
·
09 Dec 2005
·
doi:10.1073/PNAS.0509285102
A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution.
Proceedings of the National Academy of Sciences of the United States of America
·
09 Dec 2005
·
pubmed:16339895
Serial Analysis of Gene Expression Reveals Conserved Links between Protein Kinase A, Ribosome Biogenesis, and Phosphate Metabolism in
Ustilago maydis
Eukaryotic Cell
·
01 Dec 2005
·
doi:10.1128/EC.4.12.2029-2043.2005
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
BMC Genomics
·
19 Oct 2005
·
doi:10.1186/1471-2164-6-144
A physical map of the genome of Atlantic salmon, Salmo salar
Genomics
·
01 Oct 2005
·
doi:10.1016/J.YGENO.2005.06.001
A physical map of the genome of Atlantic salmon, Salmo salar.
Genomics
·
01 Oct 2005
·
pubmed:16026963
Simple, robust methods for high-throughput nanoliter-scale DNA sequencing
Genome Research
·
16 Sep 2005
·
doi:10.1101/GR.4221805
Simple, robust methods for high-throughput nanoliter-scale DNA sequencing.
Genome research
·
16 Sep 2005
·
pubmed:16169928
The Genome of the Kinetoplastid Parasite,
Leishmania major
Science
·
15 Jul 2005
·
doi:10.1126/SCIENCE.1112680
Functional genomics of the cilium, a sensory organelle.
Current biology : CB
·
24 May 2005
·
pubmed:15916950
Management and Visualization of Whole Genome Shotgun Assemblies Using SAM
BioTechniques
·
01 May 2005
·
doi:10.2144/05385ST01
Functional Genomics of the Cilium, a Sensory Organelle
Current Biology
·
01 May 2005
·
doi:10.1016/J.CUB.2005.04.059
Management and visualization of whole genome shotgun assemblies using SAM.
BioTechniques
·
01 May 2005
·
pubmed:15945370
Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression
Genome Research
·
18 Apr 2005
·
doi:10.1101/GR.3274805
Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression.
Genome research
·
18 Apr 2005
·
pubmed:15837805
Generation and annotation of the DNA sequences of human chromosomes 2 and 4.
Nature
·
07 Apr 2005
·
pubmed:15815621
Generation and annotation of the DNA sequences of human chromosomes 2 and 4
Nature
·
01 Apr 2005
·
doi:10.1038/NATURE03466
Iron-regulated transcription and capsule formation in the fungal pathogen Cryptococcus neoformans.
Molecular microbiology
·
01 Mar 2005
·
pubmed:15720553
The Genome of the Basidiomycetous Yeast and Human Pathogen
Cryptococcus neoformans
Science
·
25 Feb 2005
·
doi:10.1126/SCIENCE.1103773
Iron‐regulated transcription and capsule formation in the fungal pathogen Cryptococcus neoformans
Molecular Microbiology
·
04 Feb 2005
·
doi:10.1111/J.1365-2958.2004.04474.X
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans.
Science (New York, N.Y.)
·
13 Jan 2005
·
pubmed:15653466
High-throughput sequencing: a failure mode analysis
BMC Genomics
·
04 Jan 2005
·
doi:10.1186/1471-2164-6-2
High-throughput sequencing: a failure mode analysis.
BMC genomics
·
04 Jan 2005
·
pubmed:15631628
2004
Novel Avian Influenza H7N3 Strain Outbreak, British Columbia
Emerging Infectious Diseases
·
01 Dec 2004
·
doi:10.3201/EID1012.040743
Novel avian influenza H7N3 strain outbreak, British Columbia.
Emerging infectious diseases
·
01 Dec 2004
·
pubmed:15663859
Functional Characterization of a Catabolic Plasmid from Polychlorinated- Biphenyl-Degrading
Rhodococcus
sp. Strain RHA1
Journal of Bacteriology
·
15 Nov 2004
·
doi:10.1128/JB.186.22.7783-7795.2004
Functional characterization of a catabolic plasmid from polychlorinated- biphenyl-degrading Rhodococcus sp. strain RHA1.
Journal of bacteriology
·
01 Nov 2004
·
pubmed:15516593
The ENCODE (ENCyclopedia Of DNA Elements) Project
Science
·
22 Oct 2004
·
doi:10.1126/SCIENCE.1105136
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Research
·
15 Oct 2004
·
doi:10.1101/GR.2596504
Systematic Recovery and Analysis of Full-ORF Human cDNA Clones
Genome Research
·
15 Oct 2004
·
doi:10.1101/GR.2473704
Systematic recovery and analysis of full-ORF human cDNA clones.
Genome research
·
01 Oct 2004
·
pubmed:15489330
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Genome research
·
01 Oct 2004
·
pubmed:15489334
Differential expression of a novel ankyrin containing E3 ubiquitin-protein ligase, Hace1, in sporadic Wilms' tumor versus normal kidney
Human Molecular Genetics
·
14 Jul 2004
·
doi:10.1093/HMG/DDH215
Differential expression of a novel ankyrin containing E3 ubiquitin-protein ligase, Hace1, in sporadic Wilms' tumor versus normal kidney.
Human molecular genetics
·
14 Jul 2004
·
pubmed:15254018
A set of BAC clones spanning the human genome.
Nucleic acids research
·
09 Jul 2004
·
pubmed:15247347
A set of BAC clones spanning the human genome
Nucleic Acids Research
·
07 Jul 2004
·
doi:10.1093/NAR/GKH700
Serial Analysis of Gene Expression Profiles of Developmental Stages in Non-small Cell Lung Carcinoma
Chest
·
01 May 2004
·
doi:10.1378/CHEST.125.5_SUPPL.97S
Delineation of a minimal region of deletion at 6q16.3 in follicular lymphoma and construction of a bacterial artificial chromosome contig spanning a 6-megabase region of 6q16-q21.
Genes, chromosomes & cancer
·
01 May 2004
·
pubmed:15034870
Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
Genome Research
·
01 Apr 2004
·
doi:10.1101/GR.2336604
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Nature
·
01 Apr 2004
·
doi:10.1038/NATURE02426
Effect of TERT and ATM on gene expression profiles in human fibroblasts.
Genes, chromosomes & cancer
·
01 Apr 2004
·
pubmed:14978791
Delineation of a minimal region of deletion at 6q16.3 in follicular lymphoma and construction of a bacterial artificial chromosome contig spanning a 6‐megabase region of 6q16–q21
Genes, Chromosomes and Cancer
·
26 Feb 2004
·
doi:10.1002/GCC.20013
A tiling resolution DNA microarray with complete coverage of the human genome
Nature Genetics
·
15 Feb 2004
·
doi:10.1038/NG1307
A tiling resolution DNA microarray with complete coverage of the human genome.
Nature genetics
·
15 Feb 2004
·
pubmed:14981516
Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics
Genome Research
·
12 Feb 2004
·
doi:10.1101/GR.1687304
Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics.
Genome research
·
12 Feb 2004
·
pubmed:14962987
Automated ordering of fingerprinted clones
Bioinformatics
·
10 Feb 2004
·
doi:10.1093/BIOINFORMATICS/BTH079
Automated ordering of fingerprinted clones.
Bioinformatics (Oxford, England)
·
10 Feb 2004
·
pubmed:14871860
Effect of TERT and ATM on gene expression profiles in human fibroblasts
Genes, Chromosomes and Cancer
·
22 Jan 2004
·
doi:10.1002/GCC.20006
New Genomic Tools for Molecular Studies of Evolutionary Change in Threespine Sticklebacks
Behaviour
·
01 Jan 2004
·
doi:10.1163/1568539042948150
2003
Cryptococcus neoformans
Gene Expression during Experimental Cryptococcal Meningitis
Eukaryotic Cell
·
01 Dec 2003
·
doi:10.1128/EC.2.6.1336-1349.2003
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
PLoS Biology
·
17 Nov 2003
·
doi:10.1371/JOURNAL.PBIO.0000045
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
PLoS biology
·
17 Nov 2003
·
pubmed:14624247
Comparison of medulloblastoma and normal neural transcriptomes identifies a restricted set of activated genes
Oncogene
·
23 Oct 2003
·
doi:10.1038/SJ.ONC.1207043
Comparison of medulloblastoma and normal neural transcriptomes identifies a restricted set of activated genes.
Oncogene
·
23 Oct 2003
·
pubmed:14576832
The DNA sequence of human chromosome 7.
Nature
·
10 Jul 2003
·
pubmed:12853948
The DNA sequence of human chromosome 7
Nature
·
01 Jul 2003
·
doi:10.1038/NATURE01782
Internet Contig Explorer (iCE)—A Tool for Visualizing Clone Fingerprint Maps
Genome Research
·
01 Jun 2003
·
doi:10.1101/GR.819303
Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps.
Genome research
·
01 Jun 2003
·
pubmed:12799356
The Genome Sequence of the SARS-Associated Coronavirus
Science
·
30 May 2003
·
doi:10.1126/SCIENCE.1085953
Assessment of SAGE in Transcript Identification
Genome Research
·
12 May 2003
·
doi:10.1101/GR.873003
Assessment of SAGE in transcript identification.
Genome research
·
12 May 2003
·
pubmed:12743019
Software for Automated Analysis of DNA Fingerprinting Gels
Genome Research
·
01 May 2003
·
doi:10.1101/GR.904303
Software for automated analysis of DNA fingerprinting gels.
Genome research
·
01 May 2003
·
pubmed:12727910
The Genome sequence of the SARS-associated coronavirus.
Science (New York, N.Y.)
·
01 May 2003
·
pubmed:12730501
A SAGE approach to discovery of genes involved in autophagic cell death.
Current biology : CB
·
18 Feb 2003
·
pubmed:12593804
A SAGE Approach to Discovery of Genes Involved in Autophagic Cell Death
Current Biology
·
01 Feb 2003
·
doi:10.1016/S0960-9822(03)00082-4
Gene Expression Profiling of Cells, Tissues, and Developmental Stages of the Nematode C. elegans
Cold Spring Harbor Symposia on Quantitative Biology
·
01 Jan 2003
·
doi:10.1101/SQB.2003.68.159
A comparative map of bovine chromosome 19 based on a combination of mapping on a bacterial artificial chromosome scaffold map, a whole genome radiation hybrid panel and the human draft sequence
Cytogenetic and Genome Research
·
01 Jan 2003
·
doi:10.1159/000075721
2002
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Proceedings of the National Academy of Sciences of the United States of America
·
11 Dec 2002
·
pubmed:12477932
Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans
Genome Research
·
01 Sep 2002
·
doi:10.1101/GR.80202
Resuspension of DNA Sequencing Reaction Products in Agarose Increases Sequence Quality on an Automated Sequencer
BioTechniques
·
01 Sep 2002
·
doi:10.2144/02333ST03_11824A
Physical maps for genome analysis of serotype A and D strains of the fungal pathogen Cryptococcus neoformans.
Genome research
·
01 Sep 2002
·
pubmed:12213782
Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen Cryptococcus neoformans
Genome Research
·
21 Aug 2002
·
doi:10.1101/GR.81002
A physical map of the mouse genome
Nature
·
01 Aug 2002
·
doi:10.1038/NATURE00957
Systematic sequencing of cDNA clones using the transposon Tn5
Nucleic Acids Research
·
01 Jun 2002
·
doi:10.1093/NAR/30.11.2469
An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones
Nucleic Acids Research
·
01 Jun 2002
·
doi:10.1093/NAR/30.11.2460
An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones.
Nucleic acids research
·
01 Jun 2002
·
pubmed:12034834
Systematic sequencing of cDNA clones using the transposon Tn5.
Nucleic acids research
·
01 Jun 2002
·
pubmed:12034835
Programmed cell death takes flight: genetic and genomic approaches to gene discovery inDrosophila
Physiological Genomics
·
10 May 2002
·
doi:10.1152/PHYSIOLGENOMICS.00114.2001
Transferrin receptor 2 (TfR2) and HFE mutational analysis in non-C282Y iron overload: identification of a novel TfR2 mutation
Blood
·
17 Apr 2002
·
doi:10.1182/BLOOD-2002-01-0133
Assembly of fingerprint contigs: parallelized FPC
Bioinformatics
·
01 Mar 2002
·
doi:10.1093/BIOINFORMATICS/18.3.484
2001
An SSLP marker–anchored BAC framework map of the mouse genome
Nature Genetics
·
01 Oct 2001
·
doi:10.1038/NG1001-133
An Oligonucleotide Fingerprint Normalized and Expressed Sequence Tag Characterized Zebrafish cDNA Library
Genome Research
·
16 Aug 2001
·
doi:10.1101/GR.186901
Changes in Gene Expression Associated with Developmental Arrest and Longevity in Caenorhabditis elegans
Genome Research
·
12 Jul 2001
·
doi:10.1101/GR.184401
A physical map of the human genome
Nature
·
15 Feb 2001
·
doi:10.1038/35057157
Theories and Applications for Sequencing Randomly Selected Clones
Genome Research
·
18 Jan 2001
·
doi:10.1101/GR.GR-1339R
2000
Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana
Nature
·
01 Dec 2000
·
doi:10.1038/35048507
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Nature
·
01 Dec 2000
·
doi:10.1038/35048692
The complete sequence of a heterochromatic island from a higher eukaryote
Current Opinion in Plant Biology
·
01 Jan 2000
·
doi:10.1016/S1369-5266(00)80014-X
1999
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana
Nature
·
01 Dec 1999
·
doi:10.1038/47134
A complete BAC-based physical map of the Arabidopsis thaliana genome
Nature Genetics
·
01 Jul 1999
·
doi:10.1038/10334
An encyclopedia of mouse genes
Nature Genetics
·
01 Feb 1999
·
doi:10.1038/5976
1997
Representation of cloned genomic sequences in two sequencing vectors: correlation of DNA sequence and subclone distribution
Nucleic Acids Research
·
01 Aug 1997
·
doi:10.1093/NAR/25.15.2960
1994
Recovery of duplications by drug resistance selection in Caenorhabditis elegans
Genome
·
01 Aug 1994
·
doi:10.1139/G94-098
The Caenorhabditis elegans unc-60 gene encodes proteins homologous to a family of actin-binding proteins
Molecular and General Genetics MGG
·
01 Feb 1994
·
doi:10.1007/BF00280425
1993
The use of deficiencies to determine essential gene content in the let-56–unc-22 region of Caenorhabditis elegans
Genome
·
01 Dec 1993
·
doi:10.1139/G93-153
[no title info]
[no publisher info]
·
[no date info]
·
doi:10.1101/MCS.A006148